I don't know about mri_morphology, but you can use mri_binarize to
erode. It has several options to allow control of how the erosion is done
On 05/22/2017 12:48 PM, Gamaliz wrote:
> Douglas,
>
> I just realized that I was using the wrong feeesurfer output. I had 3
> processed MRIs for the same
how were you examining the registration? When I run the command, the
rh.white.mgz aligns perfectly with the T1.mgz
On 05/16/2017 05:38 PM, Gamaliz wrote:
> Douglas,
>
> The previous message had an images attached that seemed to be too big.
> it was "bounced" automatically. I guess too many imag
Try visualizing it in freeview instead of fslview.
On 5/16/17 12:11 PM, Gamaliz wrote:
Bruce,
I tried mris_fill, but it gives me a filled white matter volume (I
already have that in the mri directory. I need the contour only.
Douglas, Looking into the --help gave me a few ideas. I think the
Bruce,
I tried mris_fill, but it gives me a filled white matter volume (I already
have that in the mri directory. I need the contour only.
Douglas, Looking into the --help gave me a few ideas. I think the help page
(https://surfer.nmr.mgh.harvard.edu/fswiki/mri_surf2vol ) should include
this infor
If you run it with --help, it will print out examples. Did you try that?
On 5/16/17 9:26 AM, Bruce Fischl wrote:
Hi gAbE
you could try using mris_fill, or even mris_compute_volume_fractions
cheers
Bruce
On Mon, 15 May 2017, Gamaliz wrote:
My idea is to convert the registered white surface
Hi gAbE
you could try using mris_fill, or even mris_compute_volume_fractions
cheers
Bruce
On Mon,
15 May 2017, Gamaliz wrote:
My idea is to convert the registered white surface into a volume, so it can
be shown in a volume viewer (not a surface viewer). I need to display a DTI
image and m
My idea is to convert the registered white surface into a volume, so
it can be shown in a volume viewer (not a surface viewer). I need to
display a DTI image and mark the edges of the white matter as a line
on top if it.
This is not the exact command, I am not sitting in front of my
station, but
what was your mri_surf2vol cmd line? And what was the terminal output?
On 5/15/17 9:59 PM, Gamaliz wrote:
I looked at the ribbon.mgz, but it is a pial surface, not really
delineated white matter the way I need it. There is a command called
mri_sur2vol, I have tried to use it, but unsuccessfull
I looked at the ribbon.mgz, but it is a pial surface, not really delineated
white matter the way I need it. There is a command called mri_sur2vol, I
have tried to use it, but unsuccessfully, no idea if that is the solution
to my problem.
On Mon, May 15, 2017 at 9:57 PM, Douglas Greve
wrote:
> no
not sure what you mean. Have you looked at the ribbon.mgz file?
On 5/15/17 5:20 PM, Gamaliz wrote:
I need to create an image which overlaps the T1/mgz and the outer
surface of the white matter. How do I convert the surface into a mgz
volume?
--
gAbE
___
I need to create an image which overlaps the T1/mgz and the outer surface
of the white matter. How do I convert the surface into a mgz volume?
--
gAbE
___
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