If you run it with --help, it will print out examples. Did you try that?
On 5/16/17 9:26 AM, Bruce Fischl wrote:
Hi gAbE
you could try using mris_fill, or even mris_compute_volume_fractions
cheers
Bruce
On Mon, 15 May 2017, Gamaliz wrote:
My idea is to convert the registered white surface into a volume, so
it can be shown in a volume viewer (not a surface viewer). I need to
display a DTI image and mark the edges of the white matter as a line
on top if it.
This is not the exact command, I am not sitting in front of my
station, but it goes something like it. I tried many combinations,
the general error was related to the template files not on the
correct format (it could have been they couldn't be found to be
opened too, the error seemed generic).
mri_surf2vol --surfval white --hemi lh --outvol test.mgz --template
T1.mgz
--volreg T1.mgz --sd /home/user/Desktop/sf/sub1
I am at a loss for the --volreg flag.
The sd seems to indicate the directory of freesurfer (but then how is
the co
mmand aware of the specficic subject I am trying to process? I tried
using: --identity subject no luck.
'sub1' us my subject, located not in the default freesurfer directory.
There are no examples or a lot of help using it
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_surf2vol
If this is not enough I can get back to you with the specific error
tomorrow
.
On Mon, May 15, 2017 at 10:02 PM, Douglas Greve
<gr...@nmr.mgh.harvard.edu>
wrote:
what was your mri_surf2vol cmd line? And what was the terminal
output?
On 5/15/17 9:59 PM, Gamaliz wrote:
I looked at the ribbon.mgz, but it is a pial surface, not
really delineated white matter the way I need it. There is
a command called mri_sur2vol, I have tried to use it, but
unsuccessfully, no idea if that is the solution to my
problem.
On Mon, May 15, 2017 at 9:57 PM, Douglas Greve
<gr...@nmr.mgh.harvard.edu> wrote:
not sure what you mean. Have you looked at the
ribbon.mgz file?
On 5/15/17 5:20 PM, Gamaliz wrote:
I need to create an image which overlaps the
T1/mgz and the outer surface of the white
matter. How do I convert the surface into a
mgz volume?
--
gAbE
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