Re: [Freesurfer] Freesurfer and brainstem

2004-08-25 Thread Yasunari Tosa
Hi, Please check the cutting planes.Left/right is OK? Do you see the cutting plane at the pon correct? If they are bad, then you add seed point option to mri_fill so that you get the good locations. left/right cut is fixed by the corpus callosum seed, -C x y z where x y z is the MNI tala

[Freesurfer] Freesurfer and brainstem

2004-08-25 Thread camilo
Hi everyone, I have been runnig into some problems with the freesurfer. The problem is that the brainstem still appears on the white matter filled images. I have tryed to do what they tell you to do on the manual (go to expert preferences and in the WMFill menu, set the coordinates for the pons