Re: [Freesurfer] Free surfer- correcting for head size

2016-02-10 Thread Martin Reuter
Hi Chistina, the aseg.stats has all that information. You can create a table from all subjects with asegstats2table . It will also contain the ICV (probably called eTIV or something like that). And you can use it in your model, which is probably the best approach. Cheers, Martin On 01/24/201

Re: [Freesurfer] Free surfer- correcting for head size

2016-01-24 Thread Christina van den Brink
Hi Bruce (and the freesurfer community), Thanks for your reply! Would it be possible to get more details on the process of how I might go about correcting these volumes myself? It would be ideal if I had the volumes prior to entering it into my statistical model (and thus I’d prefer not to use

Re: [Freesurfer] Free surfer- correcting for head size

2016-01-11 Thread Bruce Fischl
Hi Christina we don't correct any volumes for head size - we just provide the information for you to do it yourself. I think including it as a regressor is more common than dividing it out, but perhaps others can comment. cheers Bruce On Mon, 11 Jan 2016, Christina van den Brink wrote: Hel

[Freesurfer] Free surfer- correcting for head size

2016-01-11 Thread Christina van den Brink
Hello, I have a question regarding volume-correction for the morphometry stats obtained via recon-all. I’ve noted that eTIV is derived using the atlas scaling factor in order to account for head size. I’m wondering whether the other volumes given, e.g. TotalGray or lhCorticalWhiteMatter, have a