Re: [Freesurfer] Flag for recon-all to output aparc2005 labels (freesurfer 6.0)

2020-01-28 Thread Greve, Douglas N.,Ph.D.
t;mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Greve, Douglas N.,Ph.D. <mailto:dgr...@mgh.harvard.edu> Sent: Thursday, January 16, 2020 3:40 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Su

Re: [Freesurfer] Flag for recon-all to output aparc2005 labels (freesurfer 6.0)

2020-01-16 Thread Greve, Douglas N.,Ph.D.
I don't think so, but you can run mris_ca_label by hand. Look in the recon-all.log file for the command, then use the 2005 tif instead of the 2009 tif. I think it should work. On 1/16/2020 3:31 PM, Grodin, Erica wrote: External Email - Use Caution Hello, I am running recon-all on my d

[Freesurfer] Flag for recon-all to output aparc2005 labels (freesurfer 6.0)

2020-01-16 Thread Grodin, Erica
External Email - Use Caution Hello, I am running recon-all on my data using freesurfer 6.0 which is working correctly. However, I need to create some VOIs which labels are only outputted from the aparc2005 set and do not appear in the aparc2009 set; specifically: 9001, 9501