I don't think so, but you can run mris_ca_label by hand. Look in the
recon-all.log file for the command, then use the 2005 tif instead of the 2009
tif. I think it should work.
On 1/16/2020 3:31 PM, Grodin, Erica wrote:
External Email - Use Caution
Hello,
I am running recon-all on my data using freesurfer 6.0 which is working
correctly. However, I need to create some VOIs which labels are only outputted
from the aparc2005 set and do not appear in the aparc2009 set; specifically:
9001, 9501 ctx-lh-primary-motor, ctx-rh-primary-motor
9005, 9505 ctx-lh-prim-sec-somatosensory, ctx-rh-
prim-sec-somatosensory
9002, 9502 ctx-lh-premotor, ctx-rh-premotor
9004, 9504 ctx-lh-posterior-parietal, ctx-rh-posterior-parietal
Is there a flag or some other option to output the 2005 set in addition to the
2009?
Thank you for your help,
Erica Grodin
----------------------
Erica Grodin, Ph.D.
Postdoctoral Fellow
University of California, Dept. of Psychology and Psychiatry
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