Re: [Freesurfer] FS version 8-beta

2024-12-01 Thread Douglas N. Greve
Not sure. Does it have access to as much memory as it wants? Can you send the log file? On 11/25/2024 1:29 PM, Martin Kavec wrote: > External Email - Use Caution > > Hi, > > I am giving a try to FS 8-beta, but I am not seeing such a speed up as > in the release notes: 2 hours and 24 GB

Re: [Freesurfer] FS version 8-beta

2024-11-25 Thread Martin Kavec
External Email - Use Caution Hi, I am giving a try to FS 8-beta, but I am not seeing such a speed up as in the release notes: 2 hours and 24 GB of memory. In my case a case runs on average in 4.5 - 5 hours. Also I do not see such a high demands for memory, which could be related t

Re: [Freesurfer] FS version 8-beta

2024-11-12 Thread Douglas N. Greve
I think this should work, though it might exit early due to the bug that I just posted. But a fixed version should be able to do this. On 11/7/2024 2:37 PM, Aaron Tanenbaum wrote: External Email - Use Caution Awesome, Will this version be able to process over older versions of FreeS

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Martin Kavec
istortion correction. > > Best wishes, > Malte > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > on behalf of Martin Kavec > > Sent: Friday, November 8, 2024 06:12 > To: Freesurfer support list > Subject: Re: [Freesurfer] FS version 8-beta > > Extern

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Hoffmann, Malte,PhD
hes, Malte From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Martin Kavec Sent: Friday, November 8, 2024 06:12 To: Freesurfer support list Subject: Re: [Freesurfer] FS version 8-beta External Email - Use Caution Hi, Thanks a lot. I am particularly exci

Re: [Freesurfer] FS version 8-beta

2024-11-08 Thread Martin Kavec
External Email - Use Caution Hi, Thanks a lot. I am particularly excited to the Synth* tools. I am trying SynthMorph from docker. I see that it does not use GPU (nvtop). I tried adding —gpus=0 but still see that inference runs on CPU (htop). Are there any experiences in register

Re: [Freesurfer] FS version 8-beta

2024-11-07 Thread Aaron Tanenbaum
External Email - Use Caution Awesome, Will this version be able to process over older versions of FreeSurfer? On Thu, Nov 7, 2024 at 11:54 AM Douglas N. Greve wrote: > Hi All, as some of you have figured out, we have a beta version of FS > 8.0.0. Please give it a spin and let us

[Freesurfer] FS version 8-beta

2024-11-07 Thread Douglas N. Greve
Hi All, as some of you have figured out, we have a beta version of FS 8.0.0. Please give it a spin and let us know if you have any problems or concerns. The release notes are here https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes which I have copied below. One bug that we have already fo