Re: [Freesurfer] FLAIRpial correction fails in some cases

2015-05-20 Thread Antonin Skoch
; correction failed > > Regards, > > Antonin > > __ > From: Z K [mailto:zkauf...@nmr.mgh.harvard.edu] > To: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu], Antonin > Skoch [mailto:a...@medicon.cz] > Sent: Wed, 13 May 2015 16:

Re: [Freesurfer] FLAIRpial correction fails in some cases

2015-05-19 Thread Antonin Skoch
...@nmr.mgh.harvard.edu], Antonin Skoch [mailto:a...@medicon.cz] Sent: Wed, 13 May 2015 16:39:26 +0100 Subject: Re: [Freesurfer] FLAIRpial correction fails in some cases Hello Antonin, Please try processing your subject with the dev version of freesurfer as it may fix the issue you are encountering. It can be

[Freesurfer] FLAIRpial correction fails in some cases

2015-05-13 Thread Antonin Skoch
Dear FreeSurfer experts, we are using FLAIR images to improve pial surface detection. In many cases this works OK, however, in some cases this procedure fails and the corrected pial surfaces are much worse than before. I uploaded 2 example subjects FLAIRpial_OK and FLAIRpial_not_OK to ftp://s