ok thanks.
Cheers,
Pierre
On Mon, Sep 19, 2016 at 3:17 PM, Iglesias Gonzalez, Eugenio <
e.igles...@ucl.ac.uk> wrote:
> Yes, you have so specify it separately.
> Cheers,
> /Eugenio
>
>
> Juan Eugenio Iglesias
> Senior Research Fellow
> Translational Imaging Group
> University College London
> htt
Yes, you have so specify it separately.
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
On 19 Sep 2016, at 14:13, pierre deman
mailto:deman.pie...@gmail.com>> wrote:
Hi,
Hi,
I have a short question about the additional T2 scan as well.
If I perform the full recon-all;
recon-all -s mySubject -i myT1.nii -T2 myT2.nii -T2pial -all
-hippocampal-subfields-T1T2
do I still have to precise myT2scan.nii.gz T2 for using the t2 for the
hippocampal subfields as well ? or it
If the T2 is already high-res, and having already the T1, I don’t think that
the FLAIR would help much.
Cheers,
/E
Juan Eugenio Iglesias
Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
On 5 Sep 2016, at 16:22, V
Sorry, but a 3-channel segmentation is not part of the future FS6.
Juan Eugenio Iglesias
Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
On 5 Sep 2016, at 15:54, Jovicich, Jorge
mailto:jorge.jovic...@unitn.it>>
Dear Jorge,
In my case I am using either T1+T2 or T1+FLAIR.
I had no intention of using all three at once, but now I am also wondering
if this would be an improvement.
Cheers,
Renata
On Mon, Sep 5, 2016 at 4:54 PM, Jovicich, Jorge
wrote:
> Hi Eugenio,
>
> just to confirm I understand the curr
Hi Eugenio,
just to confirm I understand the currently available options. There are
two multispectral strategies (MPRAGE + high res 2D T2, or MPRAGE + 3D
FLAIR). It would be great to see if the combo option improves things
even further for the subfields (MPRAGE + high res 2D T2 + 3D FLAIR). Is
The same one; just change the input file and the analysis ID
- T2: recon-all -s mySubject -hippocampal-subfields-T1T2 myT2scan.nii.gz
T2
- FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2 myFLAIRscan.nii.gz
FLAIR
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior Research Fellow
Dear FS experts,
I have a question about the "segmentation with an additional scan -
multispectral segmentation"
on the hippocampal sf segmentation, FS dev. 6.0.
For controls on which I had already run recon-all -all, I added the T2
sequence with the following
command:
recon-all -s \
-hippocam
