Dear Jorge, In my case I am using either T1+T2 or T1+FLAIR. I had no intention of using all three at once, but now I am also wondering if this would be an improvement.
Cheers, Renata On Mon, Sep 5, 2016 at 4:54 PM, Jovicich, Jorge <jorge.jovic...@unitn.it> wrote: > Hi Eugenio, > > just to confirm I understand the currently available options. There are > two multispectral strategies (MPRAGE + high res 2D T2, or MPRAGE + 3D > FLAIR). It would be great to see if the combo option improves things even > further for the subfields (MPRAGE + high res 2D T2 + 3D FLAIR). Is that > option at all possible with the available FS version or in the works? > > Best, > > Jorge > > On 05/09/2016 16:13, Iglesias, Eugenio wrote: > > The same one; just change the input file and the analysis ID > > - T2: recon-all -s mySubject -hippocampal-subfields-T1T2 > myT2scan.nii.gz T2 > > - FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2 > myFLAIRscan.nii.gz FLAIR > > Cheers, > > /Eugenio > > Juan Eugenio Iglesias > Senior Research Fellow > Translational Imaging Group > University College London > http://www.jeiglesias.com > http://cmictig.cs.ucl.ac.uk/ > > > On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <r...@njit.edu> wrote: > > Dear FS experts, > > > I have a question about the "segmentation with an additional scan - > multispectral segmentation" > on the hippocampal sf segmentation, FS dev. 6.0. > > For controls on which I had already run recon-all -all, I added the T2 > sequence with the following > command: > > recon-all -s <subject_name> \ > -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID> > > > Now, if I want to do the same thing with FLAIR as the additional input, which > flag should I use? > > Thank you, > > Renata > > > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > athttp://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > -- > Jorge Jovicich, Ph.D. > > MR Lab Head > Center for Mind/Brain Sciences > University of Trento, > Via delle Regole, 101 > 38100 Mattarello (TN) > Italy > > Telephone: +39-0461-28 3064 > Fax: +39-0461-28-3066 > Email: jorge.jovic...@unitn.it > MRI Methods Group: http://r.unitn.it/en/cimec/mri > CIMEC: http://www.cimec.unitn.it/ > >
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