Is $SUBJECTS_DIR/$subject exist?
On 12/18/2012 05:13 PM, priyank wrote:
> I have these files in the folder 18135.
> 18135.RS.mgz 18135_RS_register.dat.log
> 18135_RS_register.dat.sum
> 18135.RS+orig.BRIK 18135_RS_register.dat.log.old
> 18135.RS.template.mgz
> 18135.RS+orig.HEAD
Actually I received the reconned data. I did bbregistration: bbregister
--s ${sub}_FS --mov $main_path/$sub/${sub}.RS.mgz --reg
${sub}_RS_register.dat --init-fsl --bold --frame $framenum --nearest --o
${sub}.RS.template.mgz
where $sub is subject id, which is 18135.
And now all the files are in
you don't need to move them. Where is the subject data that you ran
recon-all on? You need to setenv SUBJECTS_DIR to point to that directory
(the one that contains the subject you reconned)
cheers
Bruce
On Tue, 18 Dec 2012,
priyank wrote:
I have these files in the folder 18135.
18135.RS.m
I have these files in the folder 18135.
18135.RS.mgz 18135_RS_register.dat.log 18135_RS_register.dat.sum
18135.RS+orig.BRIK 18135_RS_register.dat.log.old 18135.RS.template.mgz
18135.RS+orig.HEAD 18135_RS_register.dat.mincost
18135_RS_register.dat 18135_RS_register.dat.param
and
what is your SUBJECTS_DIR env variable?
On Tue, 18 Dec 2012, priyank wrote:
> Hi,
> I am using the command to check my registration and getting this
> error message: could not find orig as either mgz or COR. This is the
> command I am using.
> tkregister2 --mov 18135.RS.mgz --reg 18135
Hi,
I am using the command to check my registration and getting this
error message: could not find orig as either mgz or COR. This is the
command I am using.
tkregister2 --mov 18135.RS.mgz --reg 18135_RS_register.dat --surf
OUTPUT-
