...@nmr.mgh.harvard.edu
on behalf of
Bruce Fischl
Sent: Friday, May 5, 2017 4:44:49 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Differences in aseg volumes
between FreeSurfer
5.3.0 and FreeSurfer 6.0
Include the orig.mgz and voxel cords and I&#x
:44:49 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Differences in aseg volumes
between FreeSurfer
5.3.0 and FreeSurfer 6.0
Include the orig.mgz and voxel cords and I'll see if I
have already fixed it
On May 5, 2017, at 10:11 AM, Knut J Bj
[Freesurfer] Differences in aseg volumes between FreeSurfer
5.3.0 and FreeSurfer 6.0
Include the orig.mgz and voxel cords and I'll see if I have already fixed it
On May 5, 2017, at 10:11 AM, Knut J Bjuland wrote:
Hi Bruce
I found some filled-in occipital horn and some in the anterior parts. I can
volumes between FreeSurfer
5.3.0 and FreeSurfer 6.0
Include the orig.mgz and voxel cords and I'll see if I have already fixed it
On May 5, 2017, at 10:11 AM, Knut J Bjuland wrote:
Hi Bruce
I found some filled-in occipital horn and some in the anterior parts. I can
upload nu.mgz and ase
] Differences in aseg volumes between FreeSurfer 5.3.0
and FreeSurfer 6.0
Include the orig.mgz and voxel cords and I'll see if I have already fixed it
On May 5, 2017, at 10:11 AM, Knut J Bjuland
mailto:knutjor...@outlook.com>> wrote:
Hi Bruce
I found some filled-in occipital horn and some in t
Include the orig.mgz and voxel cords and I'll see if I have already fixed it
> On May 5, 2017, at 10:11 AM, Knut J Bjuland wrote:
>
> Hi Bruce
>
> I found some filled-in occipital horn and some in the anterior parts. I can
> upload nu.mgz and aseg.mgz for a subject with problems with lateral
Hi Bruce
I found some filled-in occipital horn and some in the anterior parts. I can
upload nu.mgz and aseg.mgz for a subject with problems with lateral ventricle.
Cheers
Knut Jørgen
On 4 May 2017, at 16:54, Bruce Fischl
mailto:fis...@nmr.mgh.harvard.edu>> wrote:
Hi Knut
where is it being
Hi Shane
if you upload this subject I will take a look
cheers
Bruce
On Thu, 4 May 2017, Shane
Schofield wrote:
Hi,
In my dataset, the lateral ventricles are filled in the wm.mgz (picture).
However the aseg.mgz shows that these voxels were correctly classified as
lateral ventricles. In anot
Hi Knut
where is it being filled? If it is the occipital horn we may soon have a
patch for it
cheers
Bruce
On Thu, 4 May 2017, Knut J Bjuland wrote:
Hi
Are there any options that I can use in Freesurfer 6.0 that can prevent lef
t lateral ventricle from being filled with WM? Should I send th
Hi Knut
I didn't see a 100% below. They look like what we usually see - low
contrast small structures (e.g. the pallidum) or ones with poorly
definied boundaries (the segments of the callosum, also quite small) show
large % changes (which typically correspond to not very many voxels).
cheers
Dear FreeSurfer expert,
I have compared the aseg volume between FreeSurfer 5.3 and FreeSurfer 6.0 with
asegstatsdiff from FreeSurfer 6.0 for each subject in my data set. I have
enclosed the range for some of the volume. I found the largest differences in
subcortical structures, especially in
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