Re: [Freesurfer] Creating cached versions of Xhemi registrations

2017-11-12 Thread Mehta, Chintan
Dear Doug, I'm performing a linear regression over one sample with a design matrix including columns for one continuous-valued predictor whose effect on neural measures I'm interested in testing, several covariates to adjust for (continuous- or binary-valued such as age, sex, total intracranial

Re: [Freesurfer] Creating cached versions of Xhemi registrations

2017-11-10 Thread Douglas Greve
That looks right, though I'm not sure what is in the design matrix. Is it a column of +1 and -1? On 11/9/17 12:29 PM, Mehta, Chintan wrote: Dear Doug, I think that is essentially what I figured. Based on remarks in other posts, my steps for evaluating laterality index entail applying: (1

Re: [Freesurfer] Creating cached versions of Xhemi registrations

2017-11-09 Thread Mehta, Chintan
Dear Doug, I think that is essentially what I figured. Based on remarks in other posts, my steps for evaluating laterality index entail applying: (1). Apply mri_preproc for each subject $SUB and $meas (area or thickness) individually using -xhemi flag but without any paired differences via: >

Re: [Freesurfer] Creating cached versions of Xhemi registrations

2017-11-09 Thread Douglas N Greve
Sorry, caching is not possible with xhemi. You can just run the mris_preproc command multiple times, one for each subject, specifing a subject-specific output file for each. This is allĀ  that the -qcache flag does anyway On 11/08/2017 02:10 PM, Mehta, Chintan wrote: > > Dear FreeSurfer Users,

[Freesurfer] Creating cached versions of Xhemi registrations

2017-11-08 Thread Mehta, Chintan
Dear FreeSurfer Users, I'm using FreeSurfer version 6.0. I've processing subjects with recon-all and performed surface-based interhemispheric registration (via Xhemi at https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi). I want to run a GLM on the subjects Area and Thickness from the differences