Hello,
Sorry for the late reply. It ended up working and overlapping correctly in
freeview. Thank you
On Friday, April 4, 2014 4:30 PM, Douglas N Greve
wrote:
Try this first
mri_cor2label --c aseg.mgz --id 17 --l lh.hippo.label
Then load lh.hippo.label
If wramygdala.R.001.nii is not in the
Try this first
mri_cor2label --c aseg.mgz --id 17 --l lh.hippo.label
Then load lh.hippo.label
If wramygdala.R.001.nii is not in the conformed space, your command will
not work
On 04/04/2014 05:17 PM, Cherisse Onuigbo wrote:
> mri_cor2label --c wramygdala.R.001.nii --id 1 --l wramygdala.R.001.la
mri_cor2label --c wramygdala.R.001.nii --id 1 --l wramygdala.R.001.label
tkmedit Subjects_for_Cherisse/S001 T1.mgz -aux brainmask.mgz -seg aseg.mgz
And then I added the label using the drop down menu.
On Friday, April 4, 2014 3:45 PM, Douglas N Greve
wrote:
What were your mri_cor2label and tk
What were your mri_cor2label and tkmedit command lines? SPM will never
work properly for what you are trying to do.
On 04/04/2014 04:42 PM, Cherisse Onuigbo wrote:
> I first checked it in tkmedit, but I didn't see the region in green as
> I went through the slices. I also put another label in t
I first checked it in tkmedit, but I didn't see the region in green as I went
through the slices. I also put another label in there just to check if I was
displaying labels correctly and others showed up. Then I used the display
function in spm and input the coordinates there, but it showed that
How are you checking the vertex coordinates? You can't use SPM, you'll
have to use tkmedit or freeview
On 04/04/2014 04:04 PM, Cherisse Onuigbo wrote:
> My mask is a volume mask. When I run the function normally, the
> vertices that are in the text file do not fall in the region of my mask.
> O
My mask is a volume mask. When I run the function normally, the vertices that
are in the text file do not fall in the region of my mask.
On Friday, April 4, 2014 2:28 PM, Douglas N Greve
wrote:
Hi Cherisse, i don't understand what you have done. Is the mask a volume
mask or surface mask? In
Hi Cherisse, i don't understand what you have done. Is the mask a volume
mask or surface mask? In mri_cor2label, you can specify a surface to get
surface vertex numbers.
doug
On 04/02/2014 07:03 PM, Cherisse Onuigbo wrote:
> Hello
>
> I was wondering how to create a label from a binary mask. I
Hello
I was wondering how to create a label from a binary mask. I created a mask and
then normalized it to the template space. When I tried to use mri_cor2vol, all
the vertex numbers come out as -1. I understand that the vertex numbers should
come out as -1, but when I entered the coordinates i
