I first checked it in tkmedit, but I didn't see the region in green as I went
through the slices. I also put another label in there just to check if I was
displaying labels correctly and others showed up. Then I used the display
function in spm and input the coordinates there, but it showed that the
coordinates were outside the region. Also I was wondering why in the label
file, all of the vertex id's are -1 instead of what I specify in the command.
On Friday, April 4, 2014 3:08 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:
How are you checking the vertex coordinates? You can't use SPM, you'll
have to use tkmedit or freeview
On 04/04/2014 04:04 PM, Cherisse Onuigbo wrote:
> My mask is a volume mask. When I run the function normally, the
> vertices that are in the text file do not fall in the region of my mask.
> On Friday, April 4, 2014 2:28 PM, Douglas N Greve
> <gr...@nmr.mgh.harvard.edu> wrote:
>
> Hi Cherisse, i don't understand what you have done. Is the mask a volume
> mask or surface mask? In mri_cor2label, you can specify a surface to get
> surface vertex numbers.
>
> doug
>
> On 04/02/2014 07:03 PM, Cherisse Onuigbo wrote:
> > Hello
> >
> > I was wondering how to create a label from a binary mask. I created a
> > mask and then normalized it to the template space. When I tried to use
> > mri_cor2vol, all the vertex numbers come out as -1. I understand that
> > the vertex numbers should come out as -1, but when I entered the
> > coordinates in the display function in spm, it was not in the region.
> >
> > Thank you,
> > Cherisse
>
> >
> >
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
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