Hi Massih,
Try looking at
http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
doug
On 4/4/11 2:38 PM, mmoayedi wrote:
> Hi,
>
> I'm trying to convert the individual FS parcelations to individual
> space in FSL. I'm not sure how to proceed. I've made a label from the
> indi
Hi,
I'm trying to convert the individual FS parcelations to individual
space in FSL. I'm not sure how to proceed. I've made a label from the
individual subject's parcelation, and have saved it. How would I then
convert the label to use it as a mask in the subject's structural space
in
The output has to be a volume (eg, nii or mgh), not a label. If you need
a label, run mri_cor2label on the output.
doug
Massieh Moayedi wrote:
> Hi Doug,
>
> I tried it, and it seems that it's working until the very last step.
>
> Here's the output I get:
>
> > $ mri_label2vol --seg
> '/storag
I assume the label is a binary mask in MNI152? If so, use mri_label2vol
and spec the label as a segmenation, use
$FREESURFER_HOME/average/mni152.register.dat as the registration,
specify --invertmtx, and use the orig.mgz in fsaverage as the template.
I *think* this should work.
doug
mmoayedi
Hi everyone,
I need to convert an FSL label (3D, MNI 152 space, 2mm brain) to
FreeSurfer's fsaverage brain inflated surface.
Does anyone know how to do this?
Thanks,
Massih
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