I assume the label is a binary mask in MNI152? If so, use mri_label2vol and spec the label as a segmenation, use $FREESURFER_HOME/average/mni152.register.dat as the registration, specify --invertmtx, and use the orig.mgz in fsaverage as the template. I *think* this should work.
doug mmoayedi wrote: > Hi everyone, > > I need to convert an FSL label (3D, MNI 152 space, 2mm brain) to > FreeSurfer's fsaverage brain inflated surface. > > Does anyone know how to do this? > > Thanks, > > Massih > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
