Re: [Freesurfer] Convert surface to contour

2014-04-14 Thread Bruce Fischl
Hi Ed you could just use the ribbon if you want the filled space between the surfaces, but you can't get a nice continuous contour in a voxel volume as by its nature it is discretized cheers Bruce On Mon, 14 Apr 2014, Ed Gronenschild wrote: > Hi, > > When using tkmedit or freeview, a surfac

[Freesurfer] Convert surface to contour

2014-04-14 Thread Ed Gronenschild
Hi, When using tkmedit or freeview, a surface is converted into a contour superimposed onto T1. I would like to do the same using the command: mri_surf2vol --surf pial --hemi lh --template subjID/mri/T1.mgz \ --identity --o lh.pial.mgz --mkmask I notice that the "contour" in lh.pial.mgz is not c