Hi Jie
have you tried visualizing them in freeview or tkmedit? The .img/hdr files
won't have enough information to specify direction cosines without an
associated .mat file. Does that exist? Does BrainSuite know how to read it?
Bruce
On Wed, 15 Feb 2012, Jie Shi wrote:
> Hi, experts. I have
Hi, experts. I have recently used mri_convert to convert some dicom files
into both .nii and .img. But when observing in BrainSuite, I found the
image orientation of the .nii and .img was not consistent. Any idea about
the problem and how to make them same? Thanks a lot.
Jie
__
what viewer did you use to decide that they weren't consistent?
On Wed, 15
Feb 2012, Jie Shi wrote:
> Hi, experts. I have recently used mri_convert to convert some dicom files
> into both .nii and .img. But when observing, I found the image orientation
> of the .nii and .img was not consistent. A
Hi, experts. I have recently used mri_convert to convert some dicom files
into both .nii and .img. But when observing, I found the image orientation
of the .nii and .img was not consistent. Any idea about the problem and how
to make them same? Thanks a lot.
Jie
I've just created a new wiki to describe how to do this:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
Guang Zeng wrote:
> Hi, there,
>
> I used FreeSurfer pipeline to study a subject, I convert my .nii file to .mgz
> file, and then
> send it to FreeSurfer pipeline.Everything w
Hi, there,
I used FreeSurfer pipeline to study a subject, I convert my .nii file to .mgz
file, and then
send it to FreeSurfer pipeline.Everything works well. Now I want to convert the
wmparc.mgz back to the space that the original volume was.
I tried two command
mri_covert wmparc.mgz -rl orig
Hi, there,
I got a question about mri_convert.
I have a brainmask.nii file, (max intensity value is 64, and minimum intensity
is 0), it shows good intensity contrast.
Now I want to use mri_convert to convert it to mgz file, my command line is
mri_convert A.nii --conform A.mgz
Now, I open A.m
