Re: [Freesurfer] How to convert a surface label to .nii

2016-02-16 Thread Douglas N Greve
Use mri_label2vol On 02/11/2016 09:17 AM, Afzal, Afsana wrote: > Hi, > > How can I convert a surface .label file to a .nii format? I'm using > mri_label2label in the following way but the output is always in > .label not .nii: > > mri_label2label > --srclabel dlpfc-lh.label > --outmask d

Re: [Freesurfer] How to convert a surface label to .nii

2016-02-11 Thread Douglas N Greve
yep, that's right. Thanks Marc! On 02/11/2016 09:44 AM, Marc Ramos wrote: > My guess is to use mri_label2vol > instead, and > a mri_convert to convert to nii.gz > > I hope this helps. > Marc. > > > > > On Thu, Feb 11, 2016 at 3:17 PM, Afz

Re: [Freesurfer] How to convert a surface label to .nii

2016-02-11 Thread Marc Ramos
My guess is to use mri_label2vol instead, and a mri_convert to convert to nii.gz I hope this helps. Marc. On Thu, Feb 11, 2016 at 3:17 PM, Afzal, Afsana wrote: > Hi, > > How can I convert a surface .label file to a .nii format? I'm us

[Freesurfer] How to convert a surface label to .nii

2016-02-11 Thread Afzal, Afsana
Hi, How can I convert a surface .label file to a .nii format? I'm using mri_label2label in the following way but the output is always in .label not .nii: mri_label2label --srclabel dlpfc-lh.label --outmask dlpfc-lh_mask.nii --s fsaverage --trglabel dlpfc-lh_mask.nii --regmet