My guess is to use mri_label2vol <https://surfer.nmr.mgh.harvard.edu/fswiki/mri_label2vol> instead, and a mri_convert to convert to nii.gz
I hope this helps. Marc. On Thu, Feb 11, 2016 at 3:17 PM, Afzal, Afsana <aaf...@mgh.harvard.edu> wrote: > Hi, > > How can I convert a surface .label file to a .nii format? I'm using > mri_label2label in the following way but the output is always in .label not > .nii: > > mri_label2label > --srclabel dlpfc-lh.label > --outmask dlpfc-lh_mask.nii > --s fsaverage > --trglabel dlpfc-lh_mask.nii > --regmethod surface > --hemi lh > > Thanks for your help, > > Afsana > > ______________________________ > *Afsana Afzal* > Clinical Research Coordinator > Massachusetts General Hospital > Division of Neurotherapeutics > Department of Psychiatry: Neurosciences > 149 13th St, Room 2612 > Charlestown, MA 02129 > Phone: 617-643-5129 > Fax: 617-726-4078 > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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