Re: [Freesurfer] -addtp option not working in recon-all -long

2015-03-03 Thread Bishesh Khanal
Thanks Martin. It works now. On Mon, Mar 2, 2015 at 10:51 PM, Martin Reuter wrote: > Hi Bishesh, > > it is a know bug. in your recon-all find this block (should be in line > 6148) > > if ( ! $found_tpNid ) then > echo "ERROR: $tpNid is not in > ${longbasedir}/${BaseSubjsListFn

Re: [Freesurfer] -addtp option not working in recon-all -long

2015-03-02 Thread Martin Reuter
Hi Bishesh, it is a know bug. in your recon-all find this block (should be in line 6148) if ( ! $found_tpNid ) then echo "ERROR: $tpNid is not in ${longbasedir}/${BaseSubjsListFname}" echo "" exit 1 endif and replace the first line (if statemen

Re: [Freesurfer] -addtp option not working in recon-all -long

2015-02-25 Thread Bishesh Khanal
It's 5.3.0. Here is the freesurfer version and my system info: Build stamp: freesurfer-Linux-centos6_x86_ 64-stable-pub-v5.3.0 RedHat release: Fedora release 19 (Schrödinger’s Cat) Kernel info: Linux 3.14.22-100.fc19.x86_64 x86_64 On Wed, Feb 25, 2015 at 7:54 PM, Martin Reuter wrote: > Hi B

Re: [Freesurfer] -addtp option not working in recon-all -long

2015-02-25 Thread Martin Reuter
Hi Bishesh, that is weird, it should add the time point to that file. What version of FS are you using? Best, Martin On 02/25/2015 06:03 AM, Bishesh Khanal wrote: Hi all, I wanted to add a new timepoint in my longitudinal stream without recreating the base template. recon-all -help shows th

[Freesurfer] -addtp option not working in recon-all -long

2015-02-25 Thread Bishesh Khanal
Hi all, I wanted to add a new timepoint in my longitudinal stream without recreating the base template. recon-all -help shows that I should be able to do that with: recon-all -long -addtp -all However, when I tried it I get an error. Here is the error: $recon-all -long miriad_189_AD_M_10Simula