Thanks Martin. It works now.
On Mon, Mar 2, 2015 at 10:51 PM, Martin Reuter <mreu...@nmr.mgh.harvard.edu>
wrote:
> Hi Bishesh,
>
> it is a know bug. in your recon-all find this block (should be in line
> 6148)
>
> if ( ! $found_tpNid ) then
> echo "ERROR: $tpNid is not in
> ${longbasedir}/${BaseSubjsListFname}"
> echo ""
> exit 1
> endif
>
>
> and replace the first line (if statement) with:
>
> if ( ! $found_tpNid && ! $DoAddTp ) then
>
> Best, Martin
>
>
>
> On 02/25/2015 05:21 PM, Bishesh Khanal wrote:
>
> It's 5.3.0. Here is the freesurfer version and my system info:
> Build stamp: freesurfer-Linux-centos6_x86_
> 64-stable-pub-v5.3.0
> RedHat release: Fedora release 19 (Schrödinger’s Cat)
> Kernel info: Linux 3.14.22-100.fc19.x86_64 x86_64
>
>
> On Wed, Feb 25, 2015 at 7:54 PM, Martin Reuter <
> mreu...@nmr.mgh.harvard.edu> wrote:
>
>> Hi Bishesh,
>>
>> that is weird, it should add the time point to that file. What version of
>> FS are you using?
>>
>> Best, Martin
>>
>>
>> On 02/25/2015 06:03 AM, Bishesh Khanal wrote:
>>
>> Hi all,
>> I wanted to add a new timepoint in my longitudinal stream without
>> recreating the base template. recon-all -help shows that I should be able
>> to do that with:
>> recon-all -long <tpNsubjid> <longbasesubjid> -addtp -all
>>
>> However, when I tried it I get an error.
>> Here is the error:
>> $recon-all -long miriad_189_AD_M_10SimulatedT1From01
>> miriad_189_AD_M_01_10 -addtp -all
>> ERROR: miriad_189_AD_M_10SimulatedT1From01 is not in
>> /home/bkhanal/works/freesurfer/freesurferSubjects/miriad_189_AD_M_01_10/base-tps
>>
>> Since I'm using a new timepoint which was not used in creating the base
>> template it would of course not be in base-tps. Is -addtp no having any
>> effect here ?
>> The freesurfer version and my system info:
>> Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
>> RedHat release: Fedora release 19 (Schrödinger’s Cat)
>> Kernel info: Linux 3.14.22-100.fc19.x86_64 x86_64
>>
>> Thanks,
>> Bishesh
>>
>>
>>
>>
>> _______________________________________________
>> Freesurfer mailing
>> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> --
>> Dr. Martin Reuter
>>
>> Instructor in Neurology
>> Harvard Medical School
>> Assistant in Neuroscience
>> Dept. of Radiology, Massachusetts General Hospital
>> Dept. of Neurology, Massachusetts General Hospital
>> Research Affiliate
>> Computer Science and Artificial Intelligence Lab,
>> Dept. of Electrical Engineering and Computer Science,
>> Massachusetts Institute of Technology
>>
>> A.A.Martinos Center for Biomedical Imaging
>> 149 Thirteenth Street, Suite 2301
>> Charlestown, MA 02129
>>
>> Phone: +1-617-724-5652
>> Email:
>> mreu...@nmr.mgh.harvard.edu
>> reu...@mit.edu
>> Web : http://reuter.mit.edu
>>
>>
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>>
>> The information in this e-mail is intended only for the person to whom it
>> is
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>
>
> _______________________________________________
> Freesurfer mailing
> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> --
> Dr. Martin Reuter
>
> Instructor in Neurology
> Harvard Medical School
> Assistant in Neuroscience
> Dept. of Radiology, Massachusetts General Hospital
> Dept. of Neurology, Massachusetts General Hospital
> Research Affiliate
> Computer Science and Artificial Intelligence Lab,
> Dept. of Electrical Engineering and Computer Science,
> Massachusetts Institute of Technology
>
> A.A.Martinos Center for Biomedical Imaging
> 149 Thirteenth Street, Suite 2301
> Charlestown, MA 02129
>
> Phone: +1-617-724-5652
> Email:
> mreu...@nmr.mgh.harvard.edu
> reu...@mit.edu
> Web : http://reuter.mit.edu
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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