[Freesurfer] calculated cortical thickness from segmented binary gray matter and white matter images from other software

labelled as 5. Is there any way I can manage to calculate the cortical maps from this image using freesurfer? Thanks a lot! Best, Yuanchao Zhang yuanchao.zha...@gmail.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] is infant pipeline available in freesurfer?

. I am wondering if the infant pipeline available in freesurfer? I noticed that some one in freesurfer are developing such a pipeline. thanks a lot! Best, Yuanchao Zhang yuanchao.zha...@gmail.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.

[Freesurfer] differences between qdec display and summary file for monte carlo corrected results

External Email - Use Caution Hi, freesurfer experts, As I mentioned in my last email, I see no answer. I think it is possible that my description is not clear enough. I used qdec to compare the cortical thickness of two groups and tried to correct for multiple comparisons using

[Freesurfer] Differences between qdec display and summary file for monte carlo corrected results

.sig.ocn.annot file, I saw three different clusters. It is confusing. Thanks a lot! Best, Yuanchao yuanchao.zha...@gmail.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The