[Freesurfer] merging 2 .mgz files?

Dear Freesurfer Experts, I was wondering if its possible to combine 2 mgz files? the 2 files don't have overlaps.. sincerely, Andy ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] converting volume files into .label?

Dear Freesurfer Experts, I am trying to combine aparc.annot with aseg.mgz for a Vervet monkey brain, the Aseg.mgz is hand made, not generated by freesurfer. so far I have no luck with it, So i've decided to go with a different approach, which is to add the Aseg (subcortical structures labels)

[Freesurfer] label2vol

Dear Freesurfer experts, I'm trying to convert the annotation file into (binary Analyze file), I tried the command mri_label2vol and it seems to worked fine, but I find out that the output file is in 32bit/vox resolution, and the program I want to use to open the file doesn't support that and

[Freesurfer] mris_ca_label

Dear Freesurfer Experts, I was able to use mris_ca_train to produce a atlas (.gcs) file with all the labels I am interested in, and I also modified the surface_labels.txt in the freesurfer folder so only the labels I am interested are listed on the txt file. however, when I try to use mris_c

[Freesurfer] what's the parc_dir flag in mri_ca_train

Dear Freesurfer Experts I'm trying to train the program to recognize subcorticle structures of Vervet monkeys using command mri_ca_train. I've manually made a bunch of labels, and as I use the mri_ca_train, it stopped for no reason. On the wiki page : http://surfer.nmr.mgh.harvard.edu/fswiki/

[Freesurfer] flipping freesurfer format brain (mirror image)

Hi everyone, my name's Andy, I am a researcher in UCLA brain mapping group using Freesurfer we successfully generated the Surface or the vervet monkey brain, and our next step is to perform a surface segmentation using an .gcs file we created by hand. If there's anyway to flip the freesurfer form