Re: [Freesurfer] ?h.DKTatlas100.gcs to annot

2017-12-13 Thread tony han
ist Subject: Re: [Freesurfer] ?h.DKTatlas100.gcs to annot Hi Tony I think we distribute one, but if not you should just be able to run mris_ca_label on the fsaverage subject to generate one. cheers Bruce On Wed, 13 Dec 2017, tony han wrote: > > Hi, > > > Is it possible to get an annot fi

[Freesurfer] ?h.DKTatlas100.gcs to annot

2017-12-13 Thread tony han
Hi, Is it possible to get an annot file for ?h.DKTatlas100.gcs, not for individuals, but for fsaverage atlas? I want to plot the 'standard' parcellation, instead of individual ones, on the surface so that I can use as a general reference. Thanks! Tony

Re: [Freesurfer] comparing sphere and sphere.reg

2017-11-10 Thread tony han
pping itself. cheers Bruce On Thu, 9 Nov 2017, tony han wrote: > > Hi, > > > I'm trying evaluating the distortion for each subject from their native space > to fsaverage atlas > space. Is it a appropriate measure to compare ?h.sphere and ?h.sphere.reg? I > assume t

[Freesurfer] comparing sphere and sphere.reg

2017-11-09 Thread tony han
Hi, I'm trying evaluating the distortion for each subject from their native space to fsaverage atlas space. Is it a appropriate measure to compare ?h.sphere and ?h.sphere.reg? I assume that by comparison, I may get the how each vertex warped during the registration? Thanks! Best, Tony

[Freesurfer] use MNI152 normalized images in segmentation

2011-08-25 Thread tony han
Dear all, I'm just learning Freesurfer and want to import output files of Freesurfer into Carat so that I can generate individual surface. I already have my functional and anatomical images preprocessed (realign, coregister, segment and normalize) in spm5. So the anatomical have been norma