Dear all, I'm just learning Freesurfer and want to import output files of Freesurfer into Carat so that I can generate individual surface. I already have my functional and anatomical images preprocessed (realign, coregister, segment and normalize) in spm5. So the anatomical have been normalized into MNI152 space. Is it ok if I keep these anatomical images normalized in spm5 without using MNI305 during segmentation in Freesurfer ? Or I have to go through all autorecon processing stages? If it's ok, could you tell me specifically how to do this?
all the best, Tony
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