Re: [Freesurfer] Contrast interpretation - between-groups mean

2018-06-05 Thread pedrogomesrosa
External Email - Use Caution Hi, Doug. I manually checked for the sig values, and all I got were positive. Is this unexpected? Should I write someone to get those binaries? I tried to run it again, and was not successful. Many many thanks! -- Pedro > On May 29, 2018, at 12:29

Re: [Freesurfer] version 6 NOT released yet

2016-08-24 Thread pedrogomesrosa
Many thanks! Pedro Rosa. > On Aug 24, 2016, at 13:48, Iglesias, Eugenio wrote: > > You can! It just makes your results harder to reproduce (running recon-all > with one version, and the subfields with the other). > > Juan Eugenio Iglesias > Translational Imaging Group > University College Lo

Re: [Freesurfer] version 6 NOT released yet

2016-08-24 Thread pedrogomesrosa
Hi, Doug. Is it possible to run FreeSurfer 6 Hippocampal-subfields on FreeSurfer 5.3 recons, or this also should not be done? Best, Pedro Rosa. > On Aug 24, 2016, at 11:58, Douglas Greve wrote: > > > PLEASE DO NOT USE ANYTHING LABELLED AS "6.0" FOR ANYTHING OTHER THAN > TESTING. WHEN WE RELEA

Re: [Freesurfer] glmfit and glmfit-sim after built monte-carlo simulation (superiortemporal label)

2016-04-14 Thread pedrogomesrosa
Thanks again! Pedro Rosa. > On Apr 14, 2016, at 19:25, Douglas N Greve wrote: > > yes, assuming you ran mri_glmfit with that label as a mask > >> On 04/14/2016 06:06 PM, Pedro Rosa wrote: >> Hi, >> Many many thanks. It worked: >> >> mri_glmfit-sim --glmdir teste2 --cache-dir >> /$FREESURFER_

Re: [Freesurfer] FWHM file not found

2016-03-19 Thread pedrogomesrosa
Many thanks! > On Mar 16, 2016, at 15:18, Marie Schaer wrote: > > > You still have to “smooth” even if you choose fwhm=0 to project the data in > the fsaverage space. > > So if I were you I would start with fwhm=5mm, check in the qdec console what > is the final fwhm of your data (or check