[Freesurfer] mri_ca_label problem

2013-02-19 Thread paul horton
Hi guys,I am wondering if you can help me.I have run command: mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z $FREESURFER_HOME/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz, on a 3T MPRAGE subject but it fails: i.e. it stops after the 'saving intensity scales to as

Re: [Freesurfer] FW: longitudinal analysis

2013-01-19 Thread paul horton
Sorry, that should be 4 separate anatomical scans of the same person On 19 Jan 2013, at 03:57, "Bruce Fischl" wrote: > Really? 178 separate anatomical scans of the same person? > > > > On Jan 18, 2013, at 4:31 PM, paul horton wrote: > >> Hi Bruce and Marti

Re: [Freesurfer] FW: longitudinal analysis

2013-01-18 Thread paul horton
how much RAM do you have in the machine? And are there other processes running at the same time? How many timepoints does the subject have? Bruce On Fri, 18 Jan 2013, paul horton wrote: Hi Alex,

Re: [Freesurfer] FW: longitudinal analysis

2013-01-18 Thread paul horton
just > restarted the computer. Other ones I analysed on centos. Now I am doing all > the recons on linux. > > best wishes, > > Alex. > > > > Le 1/18 9:22, paul horton a écrit : >> >> >> > Date: Fri, 18 Jan 2013 08:54:48 -0500 >> >

[Freesurfer] FW: longitudinal analysis

2013-01-18 Thread paul horton
> Date: Fri, 18 Jan 2013 08:54:48 -0500 > From: fis...@nmr.mgh.harvard.edu > To: horton_p...@hotmail.com > Subject: RE: [Freesurfer] longitudinal analysis > > Hi Paul > > can you cc the list so that others can answer? > > thanks > Bruce > On Fri, 18 Jan 2

[Freesurfer] longitudinal analysis

2013-01-18 Thread paul horton
Hi guys, I am currently running a longitudinal analysis on a set of scan. It is currently running and so far it has taken 5 days. It seems to be taking a large amount of time on a process called labelling slice. I have run the same analysis on other subjects which took about 6 hours to complete