Hi Doug,
As Bruce suggested, you may give me some help.
My question is: I paint SPM results onto Freesurfer surface, is it possible
to get the size and name of clusters on the surface?
Thanks
Karry
On Mon, Sep 3, 2012 at 10:16 PM, keepmoon wrote:
>
> Hi Bruce,
>
> Thanks for
do that, but
> you'll need to wait for Doug's return for the details
>
> cheers
> Bruce
>
> On Mon, 3 Sep 2012, keepmoon wrote:
>
> Hi Bruce,
>>
>> Thanks for your detailed explaination!
>> I have one more question about it!
>> Is it possibl
t to the surface so if there are significant
> cluster that aren't intersected by the sampling band you specify they will
> not appear on the surface.
>
> cheers
> Bruce
>
>
> On Sun, 2 Sep 2012, keepmoon wrote:
>
> Hello everyone,
>>
>> I just read the in
Hello everyone,
I just read the information about "paintig SPM results onto Freesurfer" (
http://surfer.nmr.mgh.harvard.edu/fswiki/SpmPainting). It shows how to
painting SPM results from statistic step (ex. spmT.img) to surface space. I
tested the procedure and it worked. But I don't understand w
://github.com/nipy/PySurfer/zipball/master
>
> then do from the folder:
>
> python setup.py install
>
> HTH
>
> Alex
>
> On Sat, May 5, 2012 at 10:09 PM, keepmoon
> wrote:
> > Hi Michael and Alex,
> >
> > Thanks for your suggestion about my question!
y 2, 2012 at 6:32 PM, Michael Waskom wrote:
> Hi,
>
> If you're somewhat handy with Python, you can use PySurfer for this.
> See this example:
> http://pysurfer.github.com/auto_examples/plot_fmri_conjunction.html
>
> Best,
> Michael
>
> On Wed, May 2, 2012 at 7:51 AM,
Hi Kathy,
>
> subprocess.check_output
>
> was introduced in python 2.7. You use 2.6
>
> I recommend to upgrade if possible.
>
> Otherwise we need to fix this
>
> Alex
>
> On Fri, May 4, 2012 at 3:44 PM, keepmoon
> wrote:
> > Dear Michael,
> >
> &g
Hi,
>
> If you're somewhat handy with Python, you can use PySurfer for this.
> See this example:
> http://pysurfer.github.com/auto_examples/plot_fmri_conjunction.html
>
> Best,
> Michael
>
> On Wed, May 2, 2012 at 7:51 AM, keepmoon
> wrote:
> > Dear all,
> >
chael Waskom wrote:
> Hi,
>
> If you're somewhat handy with Python, you can use PySurfer for this.
> See this example:
> http://pysurfer.github.com/auto_examples/plot_fmri_conjunction.html
>
> Best,
> Michael
>
> On Wed, May 2, 2012 at 7:51 AM, keepmoon
&g
ate an annotation with those 3 colors based on
> the thresholded sig maps. Let me know if you want instructions to do this.
> doug
>
> On 05/02/2012 10:51 AM, keepmoon wrote:
> > Dear all,
> >
> > I search my question before I post it. I did find similar questions,
> >
Dear all,
I search my question before I post it. I did find similar questions, but
didn't find answer. I want to overlay two files with different colors. For
example, one is sig1.mgh from cortical thickness, the other is sig2.mgh
from area. I want to use tksurfer overlaying them with three colors:
Dear everyone,
Anyone knows how to display overlap regions of two
significant changes in one image ? For example, I got the
significantly different regions of thickness and curv between patients and
controls. Normally we can display them seperately, but now I want to
display them toget
Dear all,
I am using Freesurfer longitudinal analysis to detect the relationship
between the change of thickness in patients and a clinical test (ex: MMSE).
I just have MRI of patients at two time points (baseline and followup)
without normal control subjects. I have already completed longitu
ad the volume measures as a surface, not
> as an overlay. Use file->load overlay. Note that you can also use mris_calc
> to generate the volume measures.
>
> cheers
> Bruce
>
> On Tue, 2 Feb 2010, keepmoon wrote:
>
> Dear Bruce,
>>
>> This is th
instruction!
Best regards
Joe
2010/2/2, keepmoon :
>
>
>
> Dear Bruce,
>
> This is the all information in tci:
>
> %
>
> $ tksurfer xalbertM lh inflated
> surfer: current subjects dir: /home/Joe/study
> surfer: not in "scripts&q
t
load *.volume, Vset_read_vertex_set:MRISreadVertexposition failed.
Thanks a lot for your help!
Joe
2010/2/2, Bruce Fischl :
>
> have you tried changing the threshold in configure->functional overlay?
> What kind of values do you see?
> On Tue, 2 Feb 2010, keepmoon wrote:
>
> Dear a
all with 0. )
Anywhere am I wrong?
Any instruction will be appriciated!
Joe
2010/2/1, keepmoon :
>
> Dear developer,
>
> I want to compare the grey matter volume by VBM to cortical thickness
> by freesurfer. But in this process, I meet a problem: how to change th
Dear developer,
I want to compare the grey matter volume by VBM to cortical thickness
by freesurfer. But in this process, I meet a problem: how to change the
points number of grey matter into the same with the vertex of thickness by
freesurfer?
Any help will be appreciated!
Best
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