[Freesurfer] left - right comparison

2015-07-02 Thread Yuval Harpaz
Dear FS group I am looking for a way to compare left to right locations. I searched previous posts and found little there, except a hint that I might use the lh / rh.sphere.reg. I tried using the spheres but found that the locations of the right and left nodes are not identical / symmetrical. shoul

[Freesurfer] bug reading BRIK

2013-08-26 Thread Yuval Harpaz
Dear Team I tried to convert AFNI BRIK file to mgz using mri_convert. the MRI was shifted strangely. I overcame it by converting the MRI to nii using afni command (3dcopy) and from there to mgz with MRI convert. If you wish to fix the BRIK reader please see the info below.

Re: [Freesurfer] Error with fs-fast selxavg3-sess

2012-12-20 Thread Yuval Harpaz
> Dear FreeSurfer group > I am new to free surfer and have dificulties running fs-fast analysis for > the first time > I use freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 on ubuntu but ran > the same commands for the same data on a NMR computer (nmr-stable5.0-env) > which gave the same error >