Re: [Freesurfer] SynthSeg volume labels

mKQR9sMzWFUY-oRDc0eMLTdgeL3zyLpUykyj8XPgiVMJzhmLS1FdAl-P0UiQ/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD Date: Tuesday, October 3, 2023 at 6:21 PM To: Freesurfer support list Subject: Re: [Freesurfer] SynthSeg volume labels

Re: [Freesurfer] SynthSeg volume labels

H_A0Izre1XRK-QykiysjbmTReRNktSJMmFZlq4gbtEpleshoF9ICc10fM_QF6LVdnqVse-xSTSFMzA_6tn5KhfI/http%3A%2F%2Fwww.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels External

[Freesurfer] SynthSeg volume labels

External Email - Use Caution Hi, Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command? [cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac] Thank you, Akila Akila Weerasekera, PhD | Postdoctoral Resea

Re: [Freesurfer] Clusterwise Correction for Multiple Comparisons

1.3, do you see the same thing? Also, what is the threshold for the image below On 3/1/2021 1:35 PM, Weerasekera, Akila wrote: Hi, After running mri_glmfit-sim (two classes) and freeview -f $SUBJECTS_DIR/fsaverage/surf/rh.inflated:overlay=cache.th13.pos.sig.cluster.mgh I get this: I would like

[Freesurfer] Clusterwise Correction for Multiple Comparisons

Hi, After running mri_glmfit-sim (two classes) and freeview -f $SUBJECTS_DIR/fsaverage/surf/rh.inflated:overlay=cache.th13.pos.sig.cluster.mgh I get this: I would like to know if this due to an error (do I need to change threshold) or no significant clusters. [cid:fdfe3765-85b2-46f6-a3b5-40fa

[Freesurfer] TRACULA

Hi, I got the following error running tracula: "Error: data and bvals/bvecs do not contain the same number of entries" Could this be because my bvals/bvecs are in the row format and not column? Thank you, Akila Akila Weerasekera, PhD | Postdoctoral Research Fellow Pain and Neuroinflamma

[Freesurfer] Error

Hello, I sent a few jobs to launchpad (FreeSurfer segmentation) and they exited with an exit=1, this is the error: "ERROR: Label FG1.mpm.vpnl does not exist in SUBJECTS_DIR fsaverage! The fsaverage link probably points to an older freesurfer version" I switched from Fs 6 to FS 7.1.1, how do I