[Freesurfer] Two tenure-track positions at the University of Delaware

External Email - Use Caution Dear colleagues, The Department of Psychological and Brain Sciences ( https://secure-web.cisco.com/1V_MfdKUpQsoSEbXnYN-yGcswGrjMebYnkelg0ir9iUerM_rnTtdZ5Vf-HItDKo_2Z3CSW_t2HotI28VZO2fyzTPzcAYPmCaHHTHKQkPCuwdNxVaU6ekWYZpHEv7uvyKFfFozU_OUmJQp8s54r47hv99N

[Freesurfer] Job ad: Small animal MRI faculty position at U. of Delaware

External Email - Use Caution Assistant/Associate Professor, Behavioral Neuroscience University of Delaware: College of Arts & Sciences: Psychological & Brain Sciences Location: Newark, DE The Department of Psychological and Brain Sciences ( https://www.psych.udel.edu) at the Uni

[Freesurfer] convert aparc+aseg.mgz to mni305

Hi, I'd like to convert a subject's aparc+aseg.mgz to mni305 (2mm) space. So, I ran the following commands (FS 5.1): (from subject's mri directory) mri_vol2vol --mov orig.mgz --tal --s $SUBNAME --o orig.mni2mm.mgz mri_label2vol --seg aparc+aseg.mgz --o aparc+aseg.mni2mm.nii.gz --reg orig.mni2mm.

[Freesurfer] preproc-sess in v5

Hi all, I noticed in the new version of Freesurfer, you now offer the option to resample raw functional data to a standard (MNI or surface) space at the preprocessing stage (preproc-sess) as opposed to after statistical maps have been computed, but I couldn't find much documentation relevant to th

Re: [Freesurfer] Binary masks from aparc+aseg.mgz

ure properly formed...Is there any obvious problem with this? (slash, obviously better way to do this?) Thanks a lot for your help. Best, Tim On Fri, Aug 20, 2010 at 4:34 PM, Douglas N Greve wrote: > you can play around with the fill threshold > > doug > > Timothy Vickery wrote: &g

Re: [Freesurfer] Binary masks from aparc+aseg.mgz

On Fri, Aug 20, 2010 at 4:15 PM, Douglas N Greve wrote: > The difference is the partial volume correction is different if there are a > bunch of other labels there (aparc+aseg) vs only one label > > doug > > Timothy Vickery wrote: > >> Hi all, >> >> I'm

[Freesurfer] Binary masks from aparc+aseg.mgz

Hi all, I'm creating binary mask volumes in a subject's native functional space from the segmented brain in aparc+aseg.mgz (FS v 4.5). I have found that doing this two different ways produces different results, and I'm wondering if anyone can illuminate why this might occur and which method is mor

Re: [Freesurfer] tksurfer

I have another suggestion. When I am logged to my machine locally, tksurfer works but only if I enable auto-redraw AND the color scale bar. However, when I log in remotely (via FreeNX), I get the same sliver problem described here. I found a workaround, which is to use VirtualGL. If you can instal