Hi, I'd like to convert a subject's aparc+aseg.mgz to mni305 (2mm) space. So, I ran the following commands (FS 5.1):
(from subject's mri directory) mri_vol2vol --mov orig.mgz --tal --s $SUBNAME --o orig.mni2mm.mgz mri_label2vol --seg aparc+aseg.mgz --o aparc+aseg.mni2mm.nii.gz --reg orig.mni2mm.mgz.reg --temp orig.mni2mm.mgz The volume orig.mni2mm.mgz looks totally fine, but the aparc+aseg.mni2mm.mgz is way off -- it is shifted anterior and superior relative to the orig volume. I double-checked orig.mgz and aparc+aseg.mgz, they are totally fine and line up. I also tried this: mri_label2vol --seg aparc+aseg.mgz --o aparc+aseg.mni2mm.nii.gz --regheader orig.mgz --temp orig.mni2mm.mgz This also did not work. Can anyone point out my error? Thanks in advance, Tim _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
