s critical for us for grant renewal
>> purposes). Ideas on a clean way to do this?
>>
>> N.
>>
>>
>> On Nov 12, 2011, at 11:10 AM, Thomas Ballinger
>> wrote:
>>
>> Satra, the ipython example looks great. The scripts I posted also use
>>
Satra, the ipython example looks great. The scripts I posted also use
fabric for running Freesurfer, but don't download Freesurfer due to it
already being installed on Pedro's image. I agree with Satra that
individually administered instances might work better for those wishing to
run a few cases w
code (including
suggestions to do the running Freesurfer part completely differently) but
otherwise you're welcome to just copy the scripts and modify them
yourselves if they're useful to you.
https://github.com/thomasballinger/remoteFreesurfer
Thomas Ballinger
2011/11/11 Nick Schmans
that
Pedro's created the image most of the work is done, I had been manually
configuring a clean ubuntu image previously.
Thomas Ballinger
Psychiatry Neuroimaging Lab
Brigham and Women's Hospital
2011/11/11 Pedro Paulo de Magalhães Oliveira Junior
> I've put together the ba
I'd also be very interested to hear about good reinotopic stimuli; we've
used 6Hz and 14 ring sizes for eccentricity mapping in the past.
Thomas Ballinger
On Thu, Jul 7, 2011 at 3:56 AM, Anders Hougaard wrote:
> Dear freesurfers,
>
>
> Which stimuli do you think provid
--in mri/norm.mgz --in-intensity-name norm --in-intensity-units
> MR --etiv --surf-wm-vol --surf-ctx-vol --ctab
> $FREESURFER_HOME/ASegStatsLUT.txt --subject yoursubject
>
> This will create "new.aseg.stats". In the header of this file you will find
> Total Gray and Total White
nd
"other" CSF values.(calculate from aseg.stats or wmparc.stats by summing
*-Lateral-Ventricle, *-Inf-Lat-Vent, 3rd-Ventricle, 4th-Ventricle, CSF, and
5th-Ventricle)
Thanks very much to anyone with time to respond,
Thomas Ballinger
Research Assistant at PNL at BWH
_
I had this problem last Friday with v4.5 centos 64 tar.gz file as well.
On Mon, Apr 11, 2011 at 7:04 AM, Nikhil Pratap Singh wrote:
> Hi,
>
> I was trying to download freesurfer realease 4.3 from the archives but
> unable to do so. Is the website
> down?freesurfer-Linux-centos4_x86_64-stable-
