Re: [Freesurfer] use and registration of FLAIR in recon-all and segmentHA

External Email - Use Caution Dear Douglas Thank you for the kind response I was wondering if Eugenio had the chance to look at this issue thank you Simone Cauzzo On Tue, Nov 12, 2024 at 12:58 PM Simone Cauzzo wrote: > Hi all > I am running Freesurfer 7.4 > I use recon

[Freesurfer] use and registration of FLAIR in recon-all and segmentHA

recon-all handles the registration, which file can I give to segmentHA_T2 as additional scan? I guess I should select the FLAIR already registered to T1.. 5) Is there a reason why I should prefer a T2 image to a FLAIR for segmentHA_T2? Thank you Simone Cauzzo, PhD University of Padova

[Freesurfer] define freeview colormap from command line

External Email - Use Caution Dear all, Using your precious hints in a past thread, I'm now displaying several surface analyses and taking a screenshot for each of them, everything from command line using the command freeview -f ***/mni152.fnirt/surf/lh.inflated:overlay=***mni152.fn

[Freesurfer] Taking screenshots on different views with tksurfer

External Email - Use Caution Dear all, I have a lot of different surface analyses to display. For each test that I performed, I have to take a screenshot of the left and right medial surfaces and left and right lateral surfaces (4 screenshots for each analysis). Since there's a lot