[Freesurfer] Postdoctoral Research Associate Position Available

External Email - Use Caution *Please direct all submission materials and inquiries to Dr. Michal Assaf @ michal.as...@hhchealth.org * *Postdoctoral Research Associate Position * The Olin Neuropsychiatry Research Center is seeking to fill a postdoctoral researcher/fellow position

Re: [Freesurfer] Fwd: TRACULA stat extraction issue

subjects data even if its failed (maybe replace the values with NaN or somethign similar for failed subjects?). Please let me know. Thanks Shashwath On Mon, Jul 4, 2016 at 3:25 AM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Shashwath - It looks like you have modified t

[Freesurfer] Calculating Skew for VOIs

Dear All - I am trying to estimate the skew and kurtosis of a VOI. Does anyone know of quick way to do this (maybe using a utility similar to FSUtils)? Any input would be greatly appreciated. Best Shashwath ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] Hippocampal Sub field segmentation

Alan- I believe the label "hippocampus" here refers to the remaining hippo segment after the algorithm has completed labelling of all subfields. In essence this would not be a measure that conveys very meaningful info. Sent from my iPhone On Nov 16, 2011, at 1:01 PM, Alan Francis wrote: > H

[Freesurfer] Hippocampal Subfield Masks

Hi all - What would be the best way to create ROI masks of the individual hippo subfields that are generated in Freesurfer? Thanks! Shashwath Meda ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman

Re: [Freesurfer] Hippocampal subfilelds label

Thanks, Koen. The issue is in my preliminary study this is the only subfield that shows a significant difference. So do you think it would still be worth reporting? On Wed, Aug 31, 2011 at 1:41 AM, Koen Van Leemput wrote: > Hi Shashwath, > > The label "hippocampus" was used

[Freesurfer] Hippocampal subfilelds label

does this particular segment represent? Thanks, Shashwath Meda ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to

Re: [Freesurfer] Custom color table overlay for ROI analysis

, Alan Francis wrote: > Hi Shashwath: > > The QDEC model in FS will allow you to do this. The website has all the > details. > > best, > > Alan > > On Wed, Jun 15, 2011 at 5:02 PM, Shashwath Meda wrote: > >> Hello Freesurfers - I just finished up with some group R

[Freesurfer] Custom color table overlay for ROI analysis

ke to display the significant ROIs on the brain with its corresponding p/F value. What would be the easiest and most straightforward way to do this? Thanks, Shashwath ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvar

[Freesurfer] Reconchecker error

Hi all - I am trying to run the reconchecker program to get some QA done on my data and I get the below error. Any help on this would be greatly appreciated! Also are there any other QA programs that would enable me to easily visualize the outputs at various stages of Freesurfer recon-all?