[Freesurfer] Freesurfer surfaces for use in CONN

2015-03-24 Thread Sarah Levy
Hello, I would like to conduct a surface-based analysis with resting-state data using SPM's CONN toolbox v14.0. Is there a way to combine the three preprocessed freesurfer files (lh, rh, mni305) into one file? CONN seems to only accept one file, or files that have exactly the same dimensions. Th

[Freesurfer] fs-fast preproc-sess

2015-01-13 Thread Sarah Levy
Hello, I am attempting to preprocess resting-state data using the preproc-sess script “preproc-sess -s subject -fsd rest -stc siemens -surface fsaverage lhrh -mni305 -fwhm 4 -per–run” The processing stops shortly after the “register-sess” command (does not complete) and the last line is “Miss