Re: [Freesurfer] analyzing fMRI data across runs with slightly different slice prescriptions

ation > properly. Do you foresee problems with that? > > doug > > > > On 12/18/13 6:17 PM, Rosa Lafer-Sousa wrote: > > Hi Doug, > > I collected all the runs in the same subject in one session for the same > brain region (roughly the same slice window) but I c

Re: [Freesurfer] analyzing fMRI data across runs with slightly different slice prescriptions

; > doug > > > On 12/18/2013 03:57 PM, Rosa Lafer-Sousa wrote: > > freesurfers, > > > > we've acquired fMRI data from [slightly different] slice > > prescriptions, all partial brain slices. we want to analyze this data > > all together, but we also

[Freesurfer] analyzing fMRI data across runs with slightly different slice prescriptions

freesurfers, we've acquired fMRI data from [slightly different] slice prescriptions, all partial brain slices. we want to analyze this data all together, but we also want to have the best registration possible [i.e., use bbregister]. what's the best way to do this? here are the ideas we have: 1

[Freesurfer] does mkcontrast-sess correct for multiple comparisons?

, Rosa -- Rosa Lafer-Sousa Lab Manager, Conway Lab Wellesley College - Neuroscience 106 Central Street Wellesley, MA Harvard Medical School -Neurobiology 220 Longwood Ave WAB Rm 215 Boston, MA 02115 210-325-3185 rlafe...@wellesley.edu ___ Freesurfer mailing

[Freesurfer] TKMedit editing aux. volume - can't remove voxels from volume

"remove" voxels). With these settings I am able to add voxels, but not remove them (that is, I can't reassign a value of 1 to 0). Do you have any advice on fixing this problem? Thanks, Rosa -- Rosa Lafer-Sousa Lab Manager, Conway Lab Wellesley College - Neuroscience 106 Central

[Freesurfer] rotate and reslice anatomical volume

? If tkregister is not the way to go, what is? thanks! Rosa Rosa Lafer-Sousa Lab Manager, Bevil Conway Wellesley College - Neuroscience 106 Central Street Wellesley, MA 210-325-3185 rlafe...@wellesley.edu ___ Freesurfer mailing list Freesurfer

Re: [Freesurfer] mri_convert questions?

reesurfer >> >> >> >_______ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Rosa Lafer-Sousa Research Assistant, Bevil Conway Wellesley College - Neurosc