[Freesurfer] OHBM Hackathon 2015

2015-04-29 Thread Nolan Nichols
Apologies for cross posting! A quick reminder for those interested in going at the heart of brain imaging analyses, the OHBM 2015 hackathon is for you: Join us for a few days to learn how to hack, meet with the developers and contribute to the next generation of open source brain imaging software

[Freesurfer] Open Brain Mapping at the 1st HBM Hackathon

2013-05-06 Thread Nolan Nichols
Sent on behalf of Thomas Grabowski, OHBM 2013, LOC Chair: Open Brain Mapping at the 1st HBM Hackathon: Open Brain Mapping in the Cloud ** OHBM 2013 is only six weeks away, bringing the brain mapping community to Seattle, a city at the forefront of open neuroscience and information technology.

Re: [Freesurfer] Amazon EC2 Version of FreeSurfer 5.1 Available

2011-11-12 Thread Nolan Nichols
long >>> running time (lessening the benefits of job distribution) and ability of a >>> recon-all job to efficiently use all of a ec2 small instance's cpu. I think >>> starcluster is pretty awesome, and I would love to push people in that >>> direction, but it won

Re: [Freesurfer] Amazon EC2 Version of FreeSurfer 5.1 Available

2011-11-12 Thread Nolan Nichols
ption. > > fabric: > http://docs.fabfile.org/en/1.3.2/index.html > > example: (another neurodebian ami) > https://github.com/wholeslide/ipython_in_a_box/blob/master/fabfile.py > > cheers, > > satra > > On Sat, Nov 12, 2011 at 6:11 AM, Nolan Nichols wrote: > >>

Re: [Freesurfer] Amazon EC2 Version of FreeSurfer 5.1 Available

2011-11-11 Thread Nolan Nichols
Thanks, Pedro! I am glad to see that you posted a public AMI for freesurfer. And thanks to Thomas for producin documentation on how to use it. This thread inspired me share a StarCluster AMI (ami-27f1384e in the us-east-1 region) that I built for batch FS jobs, which includes the initial setup fo

Re: [Freesurfer] Problems Installing Freesurfer on an EC2 AMI

2011-08-18 Thread Nolan Nichols
executables. > > n. > > > On Wed, 2011-08-17 at 20:50 -0700, Nolan Nichols wrote: > > Hello, > > > > > > I'm trying to install FreeSurfer > > (freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0.tar.gz) on an > > Ubuntu-10.04 x86_64 AMI hosted

[Freesurfer] Problems Installing Freesurfer on an EC2 AMI

2011-08-17 Thread Nolan Nichols
Hello, I'm trying to install FreeSurfer (freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0.tar.gz) on an Ubuntu-10.04 x86_64 AMI hosted on Amazon's EC2, but after following the installation instructions I am unable to complete the "Testing your Freesurfer Installation" section. I am not trying to