Hello, I'm trying to install FreeSurfer (freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0.tar.gz) on an Ubuntu-10.04 x86_64 AMI hosted on Amazon's EC2, but after following the installation instructions I am unable to complete the "Testing your Freesurfer Installation" section. I am not trying to use any of the visualization tools, just "recon-all -s bert -autorecon1" and the mri_tools, like mri_convert.
I get the following error when I run "recon-all -s bert -autorecon1" (recon-all.log attached) ... Found 3 runs /usr/local/freesurfer/subjects/bert/mri/orig/001.mgz /usr/local/freesurfer/subjects/bert/mri/orig/002.mgz /usr/local/freesurfer/subjects/bert/mri/orig/003.mgz Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /usr/local/freesurfer/subjects/bert/mri/orig/001.mgz has frames ... I saw a previous post with the multi-frame error ( http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg18444.html) and tried running "mri_info" to include in this email, but mri_info does not execute. Actually none of the mri_* tools are working and do not provide usage information when executed without any parameters. Any idea what I what I did wrong, or could this have to do with running freesurfer on EC2? Thanks for your help! Nolan
recon-all.log
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_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
