Hi, Josh, I think you can run the autorecon1, subcortseg and no segstats if
you don't want the statistics file (aseg.stats). Also, use -openmp 8 can
speed up quite a lot by multi-threading. For a regular T1 brain image, I
can the running time to get aseg.mgz in about 4-5 hours.
recon-all -i subjec
are not developing
> it anymore. You can apply the transform using mri_vol2vol, just make sure
> to use nearest nbr interp for the aseg.
>
> cheers
> Bruce
>
> On Tue, 5 Mar 2013, Natalie Han wrote:
>
> Hi, all,
>> I have a tkmedit display issue when I try to
Hi, all,
I have a tkmedit display issue when I try to add transformation to the main
volume, but the segmentation volume won't conform to Talairach domain
accordingly. Here is the commandline
tkmedit subject norm.mgz -main-transform talairach.xfm -seg aseg.mgz
really appreciate any feedback on
Hi, Doug and all, I wonder if the new version of mri_segstats on the ftp site
will change both the ICV and the SupraTentorial volume? Nick seems to
mention ICV will be different, the ReleaseNotes says the
SupraTentorial Volume will be changed to smaller. Can you explain more
on the difference of th
Hi, Bruce, I've been using FS5.1 for segmentation analysis, after I
updated the mri_segstats, the ICV does not seem to change at all, only
the SupraTentorial Volume changed. If I want to use ICV and
SupraTenrotial Volume for my analysis, is that OK to use FS5.1, I
don't see more updated version tha
Hi, all, anyone knows that if the ICV in the aseg.stats means the whole volumes
inside the skull or the total volumes of GM and WM? Does it include the CSF
between the skull and the cortex? Thanks.
Natalie
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Hi, I have a tcl script to save multiple tkmedit screen shots, but I wonder
if there is a way to suppress the pop out tkmedit windows everytime I want
to save the tif.
Basically, if I don't have a X11 window when ssh, how can I save the
tkmedit screen shots with tcl script? Is there an option in tc
