Re: [Freesurfer] tksurfer scale bar

2016-04-01 Thread Michael Asghar
e's lots of stuff on the wiki > cheers Bruce > > > > On Fri, 1 Apr 2016, Michael Asghar wrote: > >> Oh, I didn't know that. I've been advised to use tksurfer (we're >> trying to get nice images of PET data overlaid on surfaces). >> >>

Re: [Freesurfer] tksurfer scale bar

2016-04-01 Thread Michael Asghar
with the scale doesn't help. I've also tried using mri_convert to get the nii into mgz, but still get the same results. Sorry for being a pain! Michael -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Mich

Re: [Freesurfer] tksurfer scale bar

2016-04-01 Thread Michael Asghar
=lh.pet_data.mgz would be a good place to start. There's lots of stuff on the wiki cheers Bruce On Fri, 1 Apr 2016, Michael Asghar wrote: > Oh, I didn’t know that. I've been advised to use tksurfer (we're trying to > get nice images of PET data overlaid on surfaces). > > I ha

Re: [Freesurfer] tksurfer scale bar

2016-04-01 Thread Michael Asghar
cheers Bruce On Fri, 1 Apr 2016, Michael Asghar wrote: > > Hi Freesurfer > >   > > I’m struggling with trying to edit the scale bar in tksurfer. Commands > like ‘set scalebar_bright 240’ work, but draw_scalebar gives an > invalid command error. > &

[Freesurfer] tksurfer scale bar

2016-04-01 Thread Michael Asghar
Hi Freesurfer I'm struggling with trying to edit the scale bar in tksurfer. Commands like 'set scalebar_bright 240' work, but draw_scalebar gives an invalid command error. I've tried redrawing, but it doesn't help. Basically, I want the black background to become white (can do it via convert -