[Freesurfer] registration of a rescaled volume

ualize rescaled 3D volume on top of the original scans, so I can at least (semi-automatically and then) manually segment it. thanks in advance :) - malav Malav Shah PhD candidate, Michael Brecht Lab, Humboldt University zu Berlin. (+49) 163-216-9391 ___

Re: [Freesurfer] place pial matter on top of the cortex using segmentation volume

hy can’t you visualize it on the pial surface? Any error message when you attempt to do that? Can you elaborate? On Jun 14, 2023, at 12:12 PM, Malav Shah < [ mailto:malav.s...@bccn-berlin.de | malav.s...@bccn-berlin.de ] > wrote: External Email - Use Caution Thanks for your reply,

Re: [Freesurfer] place pial matter on top of the cortex using segmentation volume

g to show. If you want to show the cortical thickness on top of the pial surface, you can load it as an overlay. Ruopeng On Jun 14, 2023, at 7:30 AM, Malav Shah < [ mailto:malav.s...@bccn-berlin.de | malav.s...@bccn-berlin.de ] > wrote: External Email - Use Caution Dear freeesu

Re: [Freesurfer] Cortical thickness of elephant brain

uot; Sent: Wednesday, May 24, 2023 3:46:35 PM Subject: Re: [Freesurfer] Cortical thickness of elephant brain External Email - Use Caution Can you try using lh.thickness.mgz instead of just lh.thickness? On 5/23/2023 1:12 PM, Malav Shah wrote: External Email - Use Caution Hi there,

Re: [Freesurfer] Cortical thickness of elephant brain

2 Segmentation fault: 11 Any suggestions? Thanks in advance, malav From: "Malav Shah" To: "Freesurfer support list" Sent: Monday, May 22, 2023 5:35:56 PM Subject: Re: [Freesurfer] Cortical thickness of elephant brain External Email - Use Caution Thank you for a

[Freesurfer] Cortical thickness of elephant brain

6 faces, lh.wm.smth5: 145095 verts 298436 faces Surfaces may be out-of-date I understand there is a mismatch in the number of nodes of these surfaces. How can I rectify this issue to get to the thickness? Thanks and regards, malav Malav Shah PhD candidate, Michael Brecht Lab, Humboldt Univers

[Freesurfer] Elephant brain MRI segmentation

of MRI segmentation tools are optimised for human MRI with probability maps, they are not much helpful with elephant brain segmentation. Can anyone help me with these brains segmentation using other image processing tools? Malav Shah PhD candidate, Michael Brecht Lab, Humboldt University zu

Re: [Freesurfer] recontruction of an elephant brain

External Email - Use Caution Hi Dr. Greve, I send a gentle reminder, in case the previous mail skipped your attention. with regards, Malav From: "Malav Shah" To: "Freesurfer support list" Sent: Tuesday, April 12, 2022 3:08:50 PM Subject: Re: [Frees

Re: [Freesurfer] recontruction of an elephant brain

spare for me in those regards? Looking foward, Malav Shah From: "Douglas N. Greve" To: "freesurfer" Sent: Saturday, April 9, 2022 10:18:18 PM Subject: Re: [Freesurfer] recontruction of an elephant brain Lot's of people have adapted FS to non-human brains, jus

Re: [Freesurfer] recontruction of an elephant brain

nd regards, Malav Shah From: "Zollei, Lilla,Ph.D." To: "freesurfer" Sent: Wednesday, April 6, 2022 8:29:33 PM Subject: Re: [Freesurfer] recontruction of an elephant brain Hi Malav, Freesurfer is guided by an atlas that was built from human adult brain images. I

[Freesurfer] recontruction of an elephant brain

FreeSurfer, is WM-GM segregation, and later (if possible) cortical surface flattening, and DTI. All words of advice are welcome. Thanks :) Malav Shah PhD candidate, Michael Brecht Lab, Humboldt University zu Berlin. (+49) 163-216-9391 ___ Freesurfer

[Freesurfer] password for FS 7.2.0 Ububntu Virtual Box seetup

External Email - Use Caution Hi, may I please have the password to FS 7.2.0 Ubuntu Virtual Box setup? Thanks and regards, malav Malav Shah PhD candidate, Michael Brecht Lab, Humboldt University zu Berlin. (+49) 163-216-9391