[Freesurfer] Tksurfer option for horizontal scale bar

2023-12-12 Thread Lee, Jeungchan
Hi Freesurfers, I’m using TkSurfer to visualize my results and want to add a horizontal color scale bar. I used [ -colorscalebarflag 1 ] to do so, but I only got a vertical bar. Is there any way (command options) to get a horizontal color scale bar? Thanks, jeungchan ___

[Freesurfer] volumetric to surface using mri_vol2surf: tpl-MNI152NLin2009cAsym

2023-12-06 Thread Lee, Jeungchan
Hi Freesurfers, I was wondering if there is a registration matrix (from volumetric to surface) for MNI152NLIN2009cAsym template. I was not able to find any (relevant) dat files in $FREESURFER_HOME/average/. I have some data in that space and would like to map them on the surface for visualizati

[Freesurfer] mris_pmake on the inflated surface

2019-08-21 Thread Lee, Jeungchan
Hi, I’m trying to calculate Dijkstra distance between startVertex and endVertex on the inflated surface (fsaverage, lh.inflated) using mris_pmake. I see several options: --surface0, --surface1, --curv0, --curv1 I think I can use ‘--surface0 inflated’, but not sure about other options e.g.