you edit it using the RGB color codes?
> Thanks in advance.
> Shantanu
>
>
> On Thu, April 3, 2014 6:55 pm, Laura Taylor wrote:
> > Hi Again Doug,
> >
> > I was able to get what I was looking for after I modified my ctab file
> slightly and used tksurfer in
Do you think it would be possible to display these images properly in
freeview as well?
Thank you very much for your time,
Laura
On Wed, Apr 2, 2014 at 10:05 AM, Laura Taylor wrote:
> Hi Doug,
>
> Thank you for your reply.
>
> This was my mris_label2annot command line:
>
> wo
our mris_label2annot command line? What was the terminal
> output? Can you send the colortable file you passed with --ctab?
> doug
>
>
>
>
> On 04/01/2014 02:25 PM, Laura Taylor wrote:
> > Hello,
> >
> > I have run mri_annotation2label and then selected the labels
&
Hello,
I have run mri_annotation2label and then selected the labels corresponding
to my ROI, creating a new annotation file using mris_label2annot.
When I load my new annotation file in freeview, the ROI's are displayed
nicely in different colors. However the remainder of the brain is dark
black
Hi,
I'm having trouble displaying annotations on inflated brains in freeview.
I have loaded and selected the inflated surface and annotation for that
subject, but nothing shows up on the brain.
I have had no trouble displaying annotations on the pial surface of the
brain.
Thank you for your time
Hi there,
I am looking to somehow display a handful of cortical areas from the
Destrieux atlas (aparc.a2009s). Is there a way to do this?
Thanks,
Laura
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ppearance.*
>
> Thanks,
>
> Laura
>
>
> On Tue, Dec 17, 2013 at 11:57 AM, Douglas N Greve <
> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> So when you say you cannot load it, what do you mean?
> doug
>
>
>
onto the right hemisphere and is tye-died in appearance.
Thanks,
Laura
On Tue, Dec 17, 2013 at 11:57 AM, Douglas N Greve wrote:
>
> So when you say you cannot load it, what do you mean?
> doug
>
>
>
>
> On 12/17/2013 02:55 PM, Laura Taylor wrote:
>
>> Hi Dougl
file? Did recon-all complete properly?
> doug
>
>
> On 12/17/2013 01:35 PM, Laura Taylor wrote:
>
>> Hi again, Douglas and freesurfer experts.
>>
>> Unfortunately my problem cannot be explained by having made manual edits
>> and then not finishing recon-all. When I
appears on the correct hemisphere).
Can you help at all with this?
Thank you,
Laura
On Tue, Dec 10, 2013 at 11:45 AM, Laura Taylor wrote:
> Hi, yes thank you both. That is exactly what the problem was.
>
> Laura
>
>
> On Tue, Dec 10, 2013 at 11:12 AM, Doug
ing manual edits and then not finishing
> > a re-run of recon-all.
> > Chris
> >
> > On 12/10/2013 02:00 PM, Laura Taylor wrote:
> >> Hi,
> >>
> >> I'm trying to load lh.aparc.a2009s.annot onto the lh pial surface of
> >> a subject. Wh
to visualize. It
> included your home dir in the path probably because that was your pwd.
>
> cheers
> Bruce
>
> On Wed, 27 Nov 2013, Laura Taylor wrote:
>
> Hi,
>>
>> I previously installed set-up and have successfully used freesurfer to run
>> recon-all and visua
Hi,
I previously installed set-up and have successfully used freesurfer to run
recon-all and visualize my results in tkmedit and tksurfer. However when I
went to analyze my data and also view it in freeview I have run into a
problem with what my home directory is considered for these applications
Hi,
I have just downloaded and I thought installed freesurfer on a Debian
system (Debian 3.2.51-1 x86_64 GNU/Linux). However when I go to test the
install by typing in freeview (or any other command) in the terminal window
I get the following:
% freeview
freeview: Command not found.
Before doin
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