gz or ascii file,
only the x,y,z coordinates are converted. Is there a way to get the voxels
values of the .trk file
when converting to .nii.gz or ascii format?
Thanks,
King-Wai
--
King-Wai Chu, Ph.D.
Program Analyst
Mental Illness Research, Education and Clinical Center (MIRECC, VISN3)
J
sing
dmri_trk2trk or
mri_convert the voxel values of the .trk file don't get converted into the
.nii.gz or ascii file,
only the x,y,z coordinates are converted. Is there a way to get the voxels
values of the .trk file
when converting to .nii.gz or ascii format?
Thanks,
King-Wai
--
King-Wai C
enclosed) to install ANTs. Is there anyway this script
> could be modified to install the latest version?
>
> Thank you so much,
>
> Alan
>
> On Mon, Aug 15, 2022 at 11:40 AM King-Wai Chu
> wrote:
>
>> External Email - Use Caution
>>
>> Hi Alan,
>
this script?
>
> Thanks ever so much!
>
> Alan
>
> On Mon, Aug 15, 2022 at 10:13 AM Alan Francis
> wrote:
>
>> Thank you so much King Wai,
>>
>> On Fri, Aug 12, 2022 at 5:12 PM King-Wai Chu
>> wrote:
>>
>>> External Email -
Thank you for your suggestions. I have fixed the bet issue by
>> reinstalling FSL. But I have one more error:
>>
>> ERROR: must set ANTSPATH environment variable to use ANTs
>>
>> I tried setting
>>
>> set ANTSPATH = 0 but that did not work.
>>
environment variable to use ANTs
>
> I tried setting
>
> set ANTSPATH = 0 but that did not work.
>
> I looked up the web to see if there were any default values I could use
> for ANTs but did not come up with any.
>
> Thanks again for your help,
>
> Alan
&
tps://secure-web.cisco.com/1q5No534S3eCaYMPbpL73aDavRve-q80-4p88Pn9BopRGlLQI1tU_C1Z7nerNEfGNQG7jtovxmvHvXxNMPROSRiAKNw2aZ-q3aq1WmtcmpOoXvRwiwdnnjRKwChdCmOnfIT8wofo0PX29IeXcb94DlmzuNYshWxDX5mgBposqt4Tys2fjDnSQ4D3zTn54qHmF3wWW4XON5ejopaNPdibMgayrdMIHwFKy3VnpiyiJVpjBIMpH9Nml3JUBod
n
>
> Hi King-Wai -
>
> First of all, thank you so much for taking the time to investigate my RC
> file. I made the changes that you suggested, but the error keeps coming up.
>
> I have attached the file.
>
> Thanks again,
>
> Alan
>
> On Fri, Aug 5, 2022 at 2:03
>
>
>
> I have attached the RC file. Could you please shed some light on this?
>
> Thank you
>
> Alan
>
> On Fri, Aug 5, 2022 at 11:29 AM King-Wai Chu
> wrote:
>
>> External Email - Use Caution
>>
>> Hi Alan,
>>
>> Your pathlist
s addressed. If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Mass General
> Brigham Compliance HelpLine at
> https://secure-web.cisco.com/1XnKj3m5Ngz3XQ8OLo8siTLorw07cBJF2802aEWCwmT10kl86MlMfZaWHXtWQ_xvoSoFe19ETRJ0qeFiEx1Mb5d5yKdu6DBbnmZEJcOC5lR-T_11kBRKJX49sFd8PZcKE0FpVoqGN0-yej4ZPiOXCrL76SHzSJJeeIRhWzLGR
x6dSQurKVseOA/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline
> <
> https://secure-web.cisco.com/1WsVlijlmEIyYQfyg72ys4BBEuYJZFav7e9xZaoM93vyCLbmdNyo2ARMZciTNNLm4hqhnFDEVE4HXEwH2nqMSupMjkbsFAW-RKm0wvIIDsiIxWhoAV-trbLifyMg8lvPQe2kZQHEJL58EuX8dKNRvJIcl9mGWmvhQMCrATvb5jrWDdO4W4I1ovh
/monitor
dmri.bedpostX/xfms
in /home2/am2359/fs6_data/TRACULA/subjects_dir/57
same for 58
now you can run Parallel.docx
Hope I didn't miss anything.
Best,
King-Wai Chu
On Tue, Jun 14, 2022 at 8:55 PM Salar Dini, Elaheh <
elaheh.salard...@yale.edu> wrote:
> External Email
External Email - Use Caution
Hello,
I saw in
https://secure-web.cisco.com/15xzpk6DF2_1DXEdVnlyo_B20R76xyd06ashqKEsp8aYWp1b4lzwZu3iSa3wCz-HT8smnvRB-Je3Lpyvr_mPj1hZVI5wZosUHkwC-eDAVSm4SIHtt5XgBNVYRbGotE4Y6StaP6FHmnJ0pRWfnGnnYj4kfUF4Ewi6ArPw3o3xkiZxEz4WiBHELvpaZjJirbA5JiNzft8olDLvpW
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