External Email - Use Caution Hi Alan,
Your pathlist and "Number of path control points"(ncpts) don't match. You have more than 3 paths in the pathlist and only 3 numbers in ncpts. Best, King-Wai On Fri, Aug 5, 2022 at 10:53 AM Alan Francis <alandarkene...@gmail.com> wrote: > External Email - Use Caution > > Good morning Anastasia - > > I made the changes you suggested and removed "extraneous" commands. But > the error message still persists. Could you please shed some light on this? > Attached - latest RC file. > > The error message is : unmatched ' " ' > > Thank you > > Alan > > On Thu, Aug 4, 2022 at 12:04 PM Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > >> Hi Alan - dcmroot is the root directory under which the dicom files are >> saved. It's actually optional. In your case, either of the following will >> have the same, correct effect: >> >> set dcmroot = /home/afrancis/Imaging >> set dcmlist = (109123/109123_7T_DWI_dir72_AP_SBRef.nii.gz) >> >> OR >> >> set dcmlist = >> (/home/afrancis/Imaging/109123/109123_7T_DWI_dir72_AP_SBRef.nii.gz) >> >> In addition, there are *a lot *of things that you left in there from the >> example RC file. You should delete them entirely, unless you specifically >> want to set one of those things to something other than the default. These >> are examples that may not give you the default behavior. Also the field >> mapping files - delete those lines because you're just using the example >> names and they're not going to work. You want your RC file to have the >> minimum necessary for your analysis. >> >> Best, >> Anastasia. >> >> >> ------------------------------ >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alan Francis < >> alandarkene...@gmail.com> >> *Sent:* Thursday, August 4, 2022 12:23 PM >> *To:* Freesurfer <freesurfer@nmr.mgh.harvard.edu> >> *Subject:* [Freesurfer] Tracula Config file. >> >> >> External Email - Use Caution >> >> Hi Anastasia - >> >> Hope you are well. I am running tracula on FS 7.2. I created the RC file >> based on your recommendations. However it is giving me an error message >> when I run it. The error is : Unmatched ' " " >> >> I have attached the RC file. Could you please see where I have made an >> error. >> >> Thanks so much, >> >> Best regards, >> >> Alan >> >> -- >> *|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|* >> >> >> >> * Alan N. Francis PhD Assistant Professor of Neuroscience Institute of >> Neuroscience* >> *University of Texas, School of Medicine* >> >> *Rio Grande Valley * >> >> *Texas. * >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> *MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/147r4yKWXDa0ksyQ_uy68dtWkcYD3-JmqjORDjb8wn1yq_rsrwgA_BsryMv4A4tG4MDuknwm94cEnJDZbHhKopKetiFD1jOAz8LydOql5U6nIxNQOmhIOpsL546Pz2jHWWcBaCjM9zwxc1v7wLO1YnJ0jwqPjYSuLPLnmU7ik9jKak1dH9olnDiywVCLo2Ki1ikF7Otbd1osYYzRZkuguuxYM8Vjt12MrHYJd34xLd4ZX2a8D7xCcJyH85YOqRe3Mh9k13cvwOa6elIfClYhwJmEeWNZXi2YLSgZHtIrSwwf8lIrX5PE_5CaDIZmPGIwm/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> <https://secure-web.cisco.com/1ZQKTkD6Bp8HD_8RxmSuRqJz-pPK-zmOUYeLWCu07WHc_McPfQIF9GIgch6R1MarCZCXLRHAp6i_-dzV6JaRoWj7CmBhSSasQFjX_wX-WdCU0JBnpWNrdBqZ5yq1uP5wXiNw3DhzB7T38zS6hkKjqpG3kdba6jkk1-l1CZV0szh1pqWBEI58LBpW-vq1pVNBMemaxLJ7AAD6KUIjyzPXn_Pr2m-n_eGFtpQ1W4o8eeo8IMrPKes6mNdFEC-FT_akmSCvMrb-lnxmCIqKcamprmLhGMyLmyWpRJzvLMPcBxo7yWj9QSM5K0gi-cuCCmHb9/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> >> The information in this e-mail is intended only for the person to whom it >> is addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Mass General >> Brigham Compliance HelpLine at *MailScanner has detected a possible >> fraud attempt from "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1XnKj3m5Ngz3XQ8OLo8siTLorw07cBJF2802aEWCwmT10kl86MlMfZaWHXtWQ_xvoSoFe19ETRJ0qeFiEx1Mb5d5yKdu6DBbnmZEJcOC5lR-T_11kBRKJX49sFd8PZcKE0FpVoqGN0-yej4ZPiOXCrL76SHzSJJeeIRhWzLGRkxsDbZIAzxCt4NMorpwX2wHW4YsfzLBVVJeBWw_9eyvedZ4NyJutBZuE8aV595Kp2f8I1v_dv3nbu4juE2mdORcvSqy3unc9oTm0a0dhj85ojssfTY7c2-tEPDUYpltXeCOuJ1WkNMDJCEj9YbkeW7V3/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline >> <https://secure-web.cisco.com/11NbjxZ6dgbppOeMge0dBc4t_K0ms2pjFQPjOq8RKuKJ-PXVxWqTemfM1sbdQt2gSD9dSMSEsfOV9cBCV4AKm9vMlmw1RpMAToeqQ9UR8CRAEjsGj33CgEKw-o-lPCtIqckR7_ExS0JYI1z39BoE8vIwI5Fm-HcoNlXHrJQxX3T68h4pOj-Zu1opdph5S34NCWyI5xlOHQQ89ZqTtsecn5_CBA-WyUxDydE-aRGSIaQODCjNcpkhO2xqf-a71gFidjTwCbypPfXALsT-LH9YnqK87leS6PSF24szwID0DFSeW-E8dCr0OrIL1wpbCB4p-/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> >> <*MailScanner has detected a possible fraud attempt from >> "secure-web.cisco.com" claiming to be* >> https://secure-web.cisco.com/1XnKj3m5Ngz3XQ8OLo8siTLorw07cBJF2802aEWCwmT10kl86MlMfZaWHXtWQ_xvoSoFe19ETRJ0qeFiEx1Mb5d5yKdu6DBbnmZEJcOC5lR-T_11kBRKJX49sFd8PZcKE0FpVoqGN0-yej4ZPiOXCrL76SHzSJJeeIRhWzLGRkxsDbZIAzxCt4NMorpwX2wHW4YsfzLBVVJeBWw_9eyvedZ4NyJutBZuE8aV595Kp2f8I1v_dv3nbu4juE2mdORcvSqy3unc9oTm0a0dhj85ojssfTY7c2-tEPDUYpltXeCOuJ1WkNMDJCEj9YbkeW7V3/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline >> <https://secure-web.cisco.com/11NbjxZ6dgbppOeMge0dBc4t_K0ms2pjFQPjOq8RKuKJ-PXVxWqTemfM1sbdQt2gSD9dSMSEsfOV9cBCV4AKm9vMlmw1RpMAToeqQ9UR8CRAEjsGj33CgEKw-o-lPCtIqckR7_ExS0JYI1z39BoE8vIwI5Fm-HcoNlXHrJQxX3T68h4pOj-Zu1opdph5S34NCWyI5xlOHQQ89ZqTtsecn5_CBA-WyUxDydE-aRGSIaQODCjNcpkhO2xqf-a71gFidjTwCbypPfXALsT-LH9YnqK87leS6PSF24szwID0DFSeW-E8dCr0OrIL1wpbCB4p-/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> >> . >> > > > -- > *|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|* > > > > *Alan N. Francis PhDAssistant Professor of NeuroscienceInstitute of > Neuroscience* > *University of Texas, School of Medicine* > > *Rio Grande Valley* > > *Texas.* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/147r4yKWXDa0ksyQ_uy68dtWkcYD3-JmqjORDjb8wn1yq_rsrwgA_BsryMv4A4tG4MDuknwm94cEnJDZbHhKopKetiFD1jOAz8LydOql5U6nIxNQOmhIOpsL546Pz2jHWWcBaCjM9zwxc1v7wLO1YnJ0jwqPjYSuLPLnmU7ik9jKak1dH9olnDiywVCLo2Ki1ikF7Otbd1osYYzRZkuguuxYM8Vjt12MrHYJd34xLd4ZX2a8D7xCcJyH85YOqRe3Mh9k13cvwOa6elIfClYhwJmEeWNZXi2YLSgZHtIrSwwf8lIrX5PE_5CaDIZmPGIwm/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1XnKj3m5Ngz3XQ8OLo8siTLorw07cBJF2802aEWCwmT10kl86MlMfZaWHXtWQ_xvoSoFe19ETRJ0qeFiEx1Mb5d5yKdu6DBbnmZEJcOC5lR-T_11kBRKJX49sFd8PZcKE0FpVoqGN0-yej4ZPiOXCrL76SHzSJJeeIRhWzLGRkxsDbZIAzxCt4NMorpwX2wHW4YsfzLBVVJeBWw_9eyvedZ4NyJutBZuE8aV595Kp2f8I1v_dv3nbu4juE2mdORcvSqy3unc9oTm0a0dhj85ojssfTY7c2-tEPDUYpltXeCOuJ1WkNMDJCEj9YbkeW7V3/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1XnKj3m5Ngz3XQ8OLo8siTLorw07cBJF2802aEWCwmT10kl86MlMfZaWHXtWQ_xvoSoFe19ETRJ0qeFiEx1Mb5d5yKdu6DBbnmZEJcOC5lR-T_11kBRKJX49sFd8PZcKE0FpVoqGN0-yej4ZPiOXCrL76SHzSJJeeIRhWzLGRkxsDbZIAzxCt4NMorpwX2wHW4YsfzLBVVJeBWw_9eyvedZ4NyJutBZuE8aV595Kp2f8I1v_dv3nbu4juE2mdORcvSqy3unc9oTm0a0dhj85ojssfTY7c2-tEPDUYpltXeCOuJ1WkNMDJCEj9YbkeW7V3/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > -- King-Wai Chu, Ph.D. Program Analyst Mental Illness Research, Education and Clinical Center (MIRECC, VISN3) James J. Peters Dept. of Veterans Administration Medical Center (OOMH) 130 W. Kingsbridge Road Bronx, NY 10468
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
