Re: [Freesurfer] Tracula ERROR: fMRIframe: frame >= nframes

2014-07-02 Thread Jun Shinozaki
Hi Anastasia, You are right! There are empty spaces at the end of the lines in original bvecs and bvals. I could fix the error and finish trac-preproc without error by eliminating these spaces. Thank you so much! Regards, Jun Shinozaki 2014-07-02 15:21 GMT+09:00 Anastasia Yendiki : > >

Re: [Freesurfer] Tracula ERROR: fMRIframe: frame >= nframes

2014-07-01 Thread Jun Shinozaki
s in the end. So, I cannot fix the error. Regards, Jun Shinozaki 2014-07-01 15:56 GMT+09:00 Anastasia Yendiki : > > Hi Jun - By a simple word count on these files: > > % wc -w bvals bvecs >65 bvals > 198 bvecs > 263 total > > As you can see, there are 3 extra en

Re: [Freesurfer] Tracula ERROR: fMRIframe: frame >= nframes

2014-06-30 Thread Jun Shinozaki
files were created by freesurfer automatically. Regards, Jun Shinozaki 2014-06-30 18:38 GMT+09:00 Anastasia Yendiki : > > Hi Jun - It's failing at the point where it tries to extract the low-b > images from the DWI series. I suspect that the number of frames in the 4D > DWI volume

[Freesurfer] Tracula ERROR: fMRIframe: frame >= nframes

2014-06-29 Thread Jun Shinozaki
Dear All, I am trying to run a single subject in TRACULA (trac-all -prep -c dmrirc), but exited with ERRORS. ERROR: fMRIframe: frame >= nframes The attached file is a log file. Can anyone help me? Thank you in advance. Regards, Jun Shinozaki. [root@localhost 140518MS]# trac-all -prep