Hi Anastasia, Thank you for your e-mail. I took 65 DWIs (5 b0 volumes and 60 direction DWIs).
I checked dwi.nii.gz in the dmri folder, and dwi.nii.gz had 65 images. Also, I checked bvals and bvecs in the dmri folder, and they have 65 counts. It seems consistent. I attach bvals and bvecs. These files were created by freesurfer automatically. Regards, Jun Shinozaki 2014-06-30 18:38 GMT+09:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>: > > Hi Jun - It's failing at the point where it tries to extract the low-b > images from the DWI series. I suspect that the number of frames in the 4D > DWI volume that is extracted from your dicom does not match the number of > frames that it expects to find based on how many gradient vectors or > b-values it's looking for. So I'd check these DWI, gradient vector and > b-value files to make sure they are all consistent. > > Hope this helps, > a.y > > On Mon, 30 Jun 2014, Jun Shinozaki wrote: > >> Dear All, >> >> I am trying to run a single subject in TRACULA (trac-all -prep -c >> dmrirc), but exited with ERRORS. >> >> ERROR: fMRIframe: frame >= nframes >> >> The attached file is a log file. >> >> Can anyone help me? >> Thank you in advance. >> >> Regards, >> Jun Shinozaki. >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
bvals
Description: Binary data
bvecs
Description: Binary data
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